Search result

BaseInfo

ncRNA ID	novel_zma_miR8
Species	Zea mays
Class	miRNA
Genome position	Chr2:226741599-226741709 [-]
Reference genome	RefGen_v4
Source	SRR2089708;SRR4237227
Length	24
Mature sequence(if miRNA)	1 - AACGGCACUCGGCAAAGACGACCU - 24
Stem-loop(if miRNA)	--                   AAUU                      ACA     A   GUCGUCUUUGCCGAGUGCC    GGGACACUCGGCAAAGAGCCUG   UGGGG C   |||||||||||||||||||    ||||||||||||||||||||||   ||||| C   CAGCAGAAACGGCUCACGG    CCCUGUGAGCCGUUUCUCGGGC   GUCCC C UC                   CAAU                      --G     U
Stem-loop sequence	GUCGUCUUUGCCGAGUGCCAAUUGGGACACUCGGCAAAGAGCCUGACAUGGGGACCCUCCCUGGCGGGCUCUUUGCCGAGUGUCCCUAACGGCACUCGGCAAAGACGACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ063137.1	ncRNA:24   UCCAGCAGAAACGGCUCACGGCAA   1   *|||=|||*||||||||||=|||| targets:214   UGGUUGUCAUUGCCGAGUGUCGUU   237 Target Full Sequence	2.5	TSA: Zea mays contig64259, mRNA sequence	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   UCCAGCAGAAACGGCUCACGGCAA   1   |*|****||||||||||||||||* targets:89   AAGAAAGCUUUGCCGAGUGCCGUA   112 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   UCCAGCAGAAACGGCUCACGGCAA   1   |*|****||||||||||||||||* targets:1188   AAGAAAGCUUUGCCGAGUGCCGUA   1211 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   UCCAGCAGAAACGGCUCACGGCAA   1   |*|****||||||||||||||||* targets:1325   AAGAAAGCUUUGCCGAGUGCCGUA   1348 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   UCCAGCAGAAACGGCUCACGGCAA   1   |*|****||||||||||||||||* targets:1325   AAGAAAGCUUUGCCGAGUGCCGUA   1348 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
XM_008676330.2	ncRNA:24   UC---CAGCAGAAACGGCUCACGGCAA   1   ||---||**|||||||||||||||*|| targets:1713   AGUGUGUAUUCUUUGCCGAGUGCCUUU   1739 Target Full Sequence	2.5	PREDICTED: Zea mays amino-acid permease BAT1 homolog (LOC103650760), mRNA	NA	coding protein	psRNATarget