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BaseInfo

ncRNA ID	novel_zma_miR7
Species	Zea mays
Class	miRNA
Genome position	Chr10:145000143-145000278 [+]
Reference genome	RefGen_v4
Source	SRR2089708;SRR2089709;SRR2089710;SRR2287160;SRR2287163;SRR2089698;SRR2089699;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AAGGGCUGAUUUGGUGGUAAGGGA - 24
Stem-loop(if miRNA)	--A                                        G         C      UU     A    AGGGCUGAUUUGGUGGUAAGGGAUCCCAAGGGGAUCCAUG GGGAGGAAU CCCUUG  AUUCA A    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||    UCCCGACUAAACCACCAUUCCCUAGGGUUCCCCUAGGUAC CCCUCUUUA GGGAAU  UAAGU A CAA                                        G         U      GU     U
Stem-loop sequence	AAGGGCUGAUUUGGUGGUAAGGGAUCCCAAGGGGAUCCAUGGGGGAGGAAUCCCCUUGUUAUUCAAAAUUGAAUUGUAAGGGUAUUUCUCCCGCAUGGAUCCCCUUGGGAUCCCUUACCACCAAAUCAGCCCUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT066676.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   |||||*|||||||||||||||||* targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   |||||*|||||||||||||||||* targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363 Target Full Sequence	2.0	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   |||||*==|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	3.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   |||||*==|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	3.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   |||||*==|||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	3.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   *|||||==|||||||||||||||* targets:853   CCCCUUGUCACCAAAUCAGCCCUC   876 Target Full Sequence	3.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   *|||||==|||||||||||||||* targets:892   CCCCUUGUCACCAAAUCAGCCCUC   915 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   *|||||==|||||||||||||||* targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920 Target Full Sequence	3.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   *|||||==|||||||||||||||* targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152477.1	ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAA   1   ||-|||||=||=||||||||||||* targets:1092   UCUCCUUAUCAUCAAAUCAGCCCUG   1116 Target Full Sequence	3.0	Zea mays Putative SAC3/GANP family protein (LOC100279473), mRNA	NA	coding protein	psRNATarget
BT054307.1	ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAA   1   ||-|||||=||=||||||||||||* targets:1092   UCUCCUUAUCAUCAAAUCAGCCCUG   1116 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0234I14 mRNA, complete cds	NA	coding protein	psRNATarget
BT018533.1	ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAA   1   ||=||*|=||=||||||||||||| targets:1919   UCUCUGAUCAUCAAAUCAGCCCUU   1942 Target Full Sequence	3.0	Zea mays clone EL01N0434E06.d mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAA   1   |||-|||==|||||||||||||||* targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAA   1   |||-|||==|||||||||||||||* targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAA   1   |||-|||==|||||||||||||||* targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020538905.1	ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAA   1   ||-|||||=||=||||||||||||* targets:3861   UCUCCUUAUCAUCAAAUCAGCCCUG   3885 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538904.1	ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAA   1   ||-|||||=||=||||||||||||* targets:3864   UCUCCUUAUCAUCAAAUCAGCCCUG   3888 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008649499.2	ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAA   1   ||-|||||=||=||||||||||||* targets:3953   UCUCCUUAUCAUCAAAUCAGCCCUG   3977 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649500.2	ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAA   1   ||-|||||=||=||||||||||||* targets:3953   UCUCCUUAUCAUCAAAUCAGCCCUG   3977 Target Full Sequence	3.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X2, mRNA	NA	coding protein	psRNATarget