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BaseInfo

ncRNA ID	novel_zma_miR6
Species	Zea mays
Class	miRNA
Genome position	Chr2:229077976-229078107 [-]
Reference genome	RefGen_v4
Source	SRR2089708;SRR2089713;SRR2089715;SRR2287159;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR5451004;SRR5451005;SRR2089698;SRR2089699;SRR2089700;SRR2089704;SRR2089705;SRR2089707
Length	24
Mature sequence(if miRNA)	109 - AGGGCAUGUUCGGUUACACUAAUC - 132
Stem-loop(if miRNA)	--     A    C             C      G          C              A     U   AGGGC UGUU GGUUACACUAAUC AGAAGG GAUUGGAGGG AUUAAAUCCUCUCC AGUCA U   ||||| |||| ||||||||||||| |||||| |||||||||| |||||||||||||| |||||   UCCCG ACAA CCAAUGUGGUUAG UCUUCC CUAACUUCCC UAAUUUAGGGGAGG UCAGU U AA     A    A             A      G          C              A     U
Stem-loop sequence	AGGGCAUGUUCGGUUACACUAAUCCAGAAGGGGAUUGGAGGGCAUUAAAUCCUCUCCAAGUCAUUUUUGACUAGGAGGGGAUUUAAUCCCCUUCAAUCGCCUUCUAGAUUGGUGUAACCAAACAAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542894.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=||||||||||||||||||| targets:21   GAUUGGUGUAACCGAACAUGCCCU   44 Target Full Sequence	0.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   *|||=||||||||||||||||||| targets:549   AAUUGGUGUAACCGAACAUGCCCU   572 Target Full Sequence	0.0	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   *|||=||||||||||||||||||| targets:549   AAUUGGUGUAACCGAACAUGCCCU   572 Target Full Sequence	0.0	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
BT041883.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=|||||||||||=||||||* targets:890   GAUUGGUGUAACCGAAUAUGCCCG   913 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=|||||||||||=||||||* targets:1189   GAUUGGUGUAACCGAAUAUGCCCG   1212 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=|||||||||||=||||||* targets:2218   GAUUGGUGUAACCGAAUAUGCCCG   2241 Target Full Sequence	2.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=|||||||||||=||||||* targets:2219   GAUUGGUGUAACCGAAUAUGCCCG   2242 Target Full Sequence	2.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=|||||||||||||*||||| targets:4818   GAUUGGUGUAACCGAACAAGCCCU   4841 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=|||||||||||||*||||| targets:5045   GAUUGGUGUAACCGAACAAGCCCU   5068 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138309.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   *=||=||||||||||||||*|||| targets:1129   UGUUGGUGUAACCGAACAUACCCU   1152 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193152 (LOC100193152), mRNA	NA	coding protein	psRNATarget
BT035338.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   *=||=||||||||||||||*|||| targets:1129   UGUUGGUGUAACCGAACAUACCCU   1152 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0056C20 mRNA, complete cds	NA	coding protein	psRNATarget
JB169178.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=||*|||*|||||||||||| targets:36   GAUUGGUCUAAGCGAACAUGCCCU   59 Target Full Sequence	2.5	Sequence 6842 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240847.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=||*|||*|||||||||||| targets:36   GAUUGGUCUAAGCGAACAUGCCCU   59 Target Full Sequence	2.5	Sequence 6842 from Patent EP2985353	NA	coding protein	psRNATarget
HI408717.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=||*|||*|||||||||||| targets:36   GAUUGGUCUAAGCGAACAUGCCCU   59 Target Full Sequence	2.5	Sequence 6842 from Patent EP2074227	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=*||||||||||||*||||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=*||||||||||||*||||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   ||||=*||||||||||||*||||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
EU949284.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   |=||||*|||||||||||*||||| targets:659   GGUUAGCGUAACCGAACAAGCCCU   682 Target Full Sequence	2.5	Zea mays clone 400720 mRNA sequence	NA	coding protein	psRNATarget
DQ244893.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   |=||||*|||||||||||*||||| targets:759   GGUUAGCGUAACCGAACAAGCCCU   782 Target Full Sequence	2.5	Zea mays clone 11585 mRNA sequence	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   CUAAUCACAUUGGCUUGUACGGGA   1   |||*=|||||||||||||*||||| targets:1584   GAUCGGUGUAACCGAACAAGCCCU   1607 Target Full Sequence	1.5	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
AY110812.1	ncRNA:24   CUAA-UCACAUUGGCUUGUACGGGA   1   *|||-||*|*||||||||||||||| targets:207   AAUUGAGGGGAACCGAACAUGCCCU   231 Target Full Sequence	2.0	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget