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BaseInfo

ncRNA ID	novel_zma_miR5
Species	Zea mays
Class	miRNA
Genome position	Chr2:229237066-229237149 [-]
Reference genome	RefGen_v4
Source	SRR2089708;SRR2089709;SRR2089711;SRR1997865;SRR2089698;SRR2089700;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	61 - ACCCGGAGGGGAUUGGAGGGGCUA - 84
Stem-loop(if miRNA)	--   C                        C          U   ACC GGAGGGGAUUGGAGGGGCUAAAAU CCCUCUUUAU C   ||| |||||||||||||||||||||||| ||||||||||   UGG CCUCCUCUAGCUUCCCCGAUUUUA GGGAGGAAUA G UU   A                        A          A
Stem-loop sequence	ACCCGGAGGGGAUUGGAGGGGCUAAAAUCCCCUCUUUAUUCGAAUAAGGAGGGAAUUUUAGCCCCUUCGAUCUCCUCCAGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163850.1	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   |||||||||||||=|||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCGGGU   97 Target Full Sequence	1.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
HI403389.1	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   |||||||||||||=|||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCGGGU   97 Target Full Sequence	1.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   |||||||||||||=|||||||||| targets:74   UAGCCCCUCCAAUUCCCUCCGGGU   97 Target Full Sequence	1.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||*||||||||||||||||||||| targets:684   UAUCCCCUCCAAUCCCCUCCGGGU   707 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||*||||||||||||||||||||| targets:1564   UAUCCCCUCCAAUCCCCUCCGGGU   1587 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||*||||||||||||||||||||| targets:1584   UAUCCCCUCCAAUCCCCUCCGGGU   1607 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||*||||||||||||||||||||| targets:1608   UAUCCCCUCCAAUCCCCUCCGGGU   1631 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||*||||||||||||||||||||| targets:1641   UAUCCCCUCCAAUCCCCUCCGGGU   1664 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||||||||||||||||||||||** targets:3500   UAGCCCCUCCAAUCCCCUCCGGUA   3523 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||||||||||||||||||||||** targets:3535   UAGCCCCUCCAAUCCCCUCCGGUA   3558 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||||||||=|||||||||||||*| targets:1113   UAGCCCCUUCAAUCCCCUCCGGUU   1136 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   AUCGGGGAGGUUAGGGGAGGCCCA   1   ||*|||||||||||||||||||** targets:1031   UAACCCCUCCAAUCCCCUCCGGUA   1054 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget