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BaseInfo

ncRNA ID novel_zma_miR4
Species Zea mays
Class miRNA
Genome position Chr3:128479461-128479516 [-]
Reference genome RefGen_v4
Source SRR1583943
Length 23
Mature sequence(if miRNA) 34 - UUUUUAGUUGUCGCUGGAUAAUU - 56
Stem-loop(if miRNA) --                    AUUUAA
  UUUUUAGUUGUCGCUGGAUA      U
  ||||||||||||||||||||
  AAAAAUCAAUAGCGACCUAU      U
AA                    CACGUU
Stem-loop sequence UUUUUAGUUGUCGCUGGAUAAUUUAAUUUUGCACUAUCCAGCGAUAACUAAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008656230.2
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||||||=||||||||||||||||
targets:33   AAUUAUUCAGCGACAACUAAAAA   55

1.0 PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA NA coding protein psRNATarget
XM_008645651.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||||||||||||||||
targets:1691   UAUUAUCCAGCGACAACUAAAAA   1713

0.0 PREDICTED: Zea mays CAAX prenyl protease 1 (LOC100286144), transcript variant X1, mRNA NA coding protein psRNATarget
EU975832.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||||||||||||||||
targets:1666   UAUUAUCCAGCGACAACUAAAAA   1688

0.0 Zea mays clone 502363 CAAX prenyl protease 1 mRNA, complete cds NA coding protein psRNATarget
NM_001159032.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||||||||||||||||
targets:1666   UAUUAUCCAGCGACAACUAAAAA   1688

0.0 Zea mays CAAX prenyl protease 1 (LOC100286144), mRNA NA coding protein psRNATarget
BT065586.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||||||||||||||||
targets:1656   UAUUAUCCAGCGACAACUAAAAA   1678

0.0 Zea mays full-length cDNA clone ZM_BFb0315O03 mRNA, complete cds NA coding protein psRNATarget
XM_020551485.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:2574   AACUAUCCAGCGACAACUAAAAA   2596

0.0 PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674191.2
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:1197   AACUAUCCAGCGACAACUAAAAA   1219

0.0 PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA NA coding protein psRNATarget
EU964807.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:1561   AACUAUCCAGCGACAACUAAAAA   1583

0.0 Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds NA coding protein psRNATarget
NM_001156357.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:1561   AACUAUCCAGCGACAACUAAAAA   1583

0.0 Zea mays Acetylornithine deacetylase (pco121857a), mRNA NA coding protein psRNATarget
BT065656.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:1478   AACUAUCCAGCGACAACUAAAAA   1500

0.0 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds NA coding protein psRNATarget
NM_001175582.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:1478   AACUAUCCAGCGACAACUAAAAA   1500

0.0 Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA NA coding protein psRNATarget
XM_020549872.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:1311   AACUAUCCAGCGACAACUAAAAA   1333

0.0 PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA NA coding protein psRNATarget
EU971616.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:1208   AACUAUCCAGCGACAACUAAAAA   1230

0.0 Zea mays clone 368130 rieske domain containing protein mRNA, complete cds NA coding protein psRNATarget
BT062468.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:617   AACUAUCCAGCGACAACUAAAAA   639

0.0 Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds NA coding protein psRNATarget
EZ089411.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:353   AACUAUCCAGCGACAACUAAAAA   375

0.0 TSA: Zea mays contig25057, mRNA sequence NA coding protein psRNATarget
HI407269.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:52   AACUAUCCAGCGACAACUAAAAA   74

0.0 Sequence 5394 from Patent EP2074227 NA coding protein psRNATarget
JB167730.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:52   AACUAUCCAGCGACAACUAAAAA   74

0.0 Sequence 5394 from Patent EP2559767 NA coding protein psRNATarget
LQ239399.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:52   AACUAUCCAGCGACAACUAAAAA   74

0.0 Sequence 5394 from Patent EP2985353 NA coding protein psRNATarget
HI409551.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:42   AACUAUCCAGCGACAACUAAAAA   64

0.0 Sequence 7676 from Patent EP2074227 NA coding protein psRNATarget
JB170012.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:42   AACUAUCCAGCGACAACUAAAAA   64

0.0 Sequence 7676 from Patent EP2559767 NA coding protein psRNATarget
LQ241681.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:42   AACUAUCCAGCGACAACUAAAAA   64

0.0 Sequence 7676 from Patent EP2985353 NA coding protein psRNATarget
LQ235202.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:39   AACUAUCCAGCGACAACUAAAAA   61

0.0 Sequence 1197 from Patent EP2985353 NA coding protein psRNATarget
HI403072.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:39   AACUAUCCAGCGACAACUAAAAA   61

0.0 Sequence 1197 from Patent EP2074227 NA coding protein psRNATarget
JB163533.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||||||||||||||
targets:39   AACUAUCCAGCGACAACUAAAAA   61

0.0 Sequence 1197 from Patent EP2559767 NA coding protein psRNATarget
LQ239360.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||||||||||
targets:52   AACUAUUCAGCGACAACUAAAAA   74

1.0 Sequence 5355 from Patent EP2985353 NA coding protein psRNATarget
HI407230.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||||||||||
targets:52   AACUAUUCAGCGACAACUAAAAA   74

1.0 Sequence 5355 from Patent EP2074227 NA coding protein psRNATarget
JB167691.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||||||||||
targets:52   AACUAUUCAGCGACAACUAAAAA   74

1.0 Sequence 5355 from Patent EP2559767 NA coding protein psRNATarget
HI403062.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||||||||||
targets:39   AACUAUUCAGCGACAACUAAAAA   61

1.0 Sequence 1187 from Patent EP2074227 NA coding protein psRNATarget
LQ235192.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||||||||||
targets:39   AACUAUUCAGCGACAACUAAAAA   61

1.0 Sequence 1187 from Patent EP2985353 NA coding protein psRNATarget
JB163523.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||||||||||
targets:39   AACUAUUCAGCGACAACUAAAAA   61

1.0 Sequence 1187 from Patent EP2559767 NA coding protein psRNATarget
EU957018.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *|||||||||||||||*||||||
targets:2046   CAUUAUCCAGCGACAAAUAAAAA   2068

1.5 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
HI409683.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||=|||||||||
targets:42   AACUAUUCAGCGAUAACUAAAAA   64

2.5 Sequence 7808 from Patent EP2074227 NA coding protein psRNATarget
JB170144.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||=|||||||||
targets:42   AACUAUUCAGCGAUAACUAAAAA   64

2.5 Sequence 7808 from Patent EP2559767 NA coding protein psRNATarget
LQ241813.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||=|||||||||
targets:42   AACUAUUCAGCGAUAACUAAAAA   64

2.5 Sequence 7808 from Patent EP2985353 NA coding protein psRNATarget
JB167672.1
ncRNA:23   UUAAUAGGUCGCUGUUGA-UUUUU   1
  ||*|||||||||||||||-|||||
targets:52   AACUAUCCAGCGACAACUUAAAAA   75

3.0 Sequence 5336 from Patent EP2559767 NA coding protein psRNATarget
LQ239341.1
ncRNA:23   UUAAUAGGUCGCUGUUGA-UUUUU   1
  ||*|||||||||||||||-|||||
targets:52   AACUAUCCAGCGACAACUUAAAAA   75

3.0 Sequence 5336 from Patent EP2985353 NA coding protein psRNATarget
HI407211.1
ncRNA:23   UUAAUAGGUCGCUGUUGA-UUUUU   1
  ||*|||||||||||||||-|||||
targets:52   AACUAUCCAGCGACAACUUAAAAA   75

3.0 Sequence 5336 from Patent EP2074227 NA coding protein psRNATarget
HI408598.1
ncRNA:23   UUA-AUAGGUCGCUGUUGAUUUUU   1
  *||-|||||||||||||||||||*
targets:50   UAUCUAUCCAGCGACAACUAAAAC   73

1.0 Sequence 6723 from Patent EP2074227 NA coding protein psRNATarget
JB169059.1
ncRNA:23   UUA-AUAGGUCGCUGUUGAUUUUU   1
  *||-|||||||||||||||||||*
targets:50   UAUCUAUCCAGCGACAACUAAAAC   73

1.0 Sequence 6723 from Patent EP2559767 NA coding protein psRNATarget
LQ240728.1
ncRNA:23   UUA-AUAGGUCGCUGUUGAUUUUU   1
  *||-|||||||||||||||||||*
targets:50   UAUCUAUCCAGCGACAACUAAAAC   73

1.0 Sequence 6723 from Patent EP2985353 NA coding protein psRNATarget
HI410051.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||||||||||||=|||||*
targets:47   AACUAUCCAGCGACAAUUAAAAU   69

2.5 Sequence 8176 from Patent EP2074227 NA coding protein psRNATarget
LQ242181.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||||||||||||=|||||*
targets:47   AACUAUCCAGCGACAAUUAAAAU   69

2.5 Sequence 8176 from Patent EP2985353 NA coding protein psRNATarget
JB170512.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||||||||||||=|||||*
targets:47   AACUAUCCAGCGACAAUUAAAAU   69

2.5 Sequence 8176 from Patent EP2559767 NA coding protein psRNATarget
NM_001352327.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||*|||||||||||
targets:2715   AACUAUCCAGCAACAACUAAAAA   2737

1.5 Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA NA coding protein psRNATarget
EU971439.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||*|||||||||||
targets:2159   AACUAUCCAGCUACAACUAAAAA   2181

1.5 Zea mays clone 364738 cyclin-like F-box mRNA, complete cds NA coding protein psRNATarget
NM_001158152.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||||*|||||||||||
targets:2159   AACUAUCCAGCUACAACUAAAAA   2181

1.5 Zea mays cyclin-like F-box (LOC100285258), mRNA NA coding protein psRNATarget
NM_001153043.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||*|||||||||||||||
targets:881   AACUAUCGAGCGACAACUAAAAA   903

1.0 Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA NA coding protein psRNATarget
BT055583.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||*|||||||||||||||
targets:881   AACUAUCGAGCGACAACUAAAAA   903

1.0 Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds NA coding protein psRNATarget
EU957761.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*||||||*|||||||||||||
targets:338   AACUAUCCAACGACAACUAAAAA   360

1.0 Zea mays clone 1614826 mRNA sequence NA coding protein psRNATarget
LQ238250.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||||||||*||||||||||
targets:42   AACUAUCCAGCGCCAACUAAAAA   64

1.5 Sequence 4245 from Patent EP2985353 NA coding protein psRNATarget
HI406120.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||||||||*||||||||||
targets:42   AACUAUCCAGCGCCAACUAAAAA   64

1.5 Sequence 4245 from Patent EP2074227 NA coding protein psRNATarget
JB166581.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||||||||*||||||||||
targets:42   AACUAUCCAGCGCCAACUAAAAA   64

1.5 Sequence 4245 from Patent EP2559767 NA coding protein psRNATarget
NM_001149050.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||*||||||||||||*
targets:507   CAUUAUCCAACGACAACUAAAAU   529

2.0 Zea mays hypothetical protein (LOC100274760), mRNA NA coding protein psRNATarget
EU952581.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||*||||||||||||*
targets:507   CAUUAUCCAACGACAACUAAAAU   529

2.0 Zea mays clone 1283791 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB166836.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||*||||||||||||*
targets:41   CAUUAUCCAACGACAACUAAAAU   63

2.0 Sequence 4500 from Patent EP2559767 NA coding protein psRNATarget
LQ238505.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||*||||||||||||*
targets:41   CAUUAUCCAACGACAACUAAAAU   63

2.0 Sequence 4500 from Patent EP2985353 NA coding protein psRNATarget
HI406375.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  *||||||||*||||||||||||*
targets:41   CAUUAUCCAACGACAACUAAAAU   63

2.0 Sequence 4500 from Patent EP2074227 NA coding protein psRNATarget
XM_008656166.2
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:1310   UAUACUAUCCAGCGACAAUUAAAAC   1334

2.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001138729.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:1446   UAUACUAUCCAGCGACAAUUAAAAC   1470

2.5 Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA NA coding protein psRNATarget
BT035950.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:1446   UAUACUAUCCAGCGACAAUUAAAAC   1470

2.5 Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds NA coding protein psRNATarget
XM_008656167.2
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:1265   UAUACUAUCCAGCGACAAUUAAAAC   1289

2.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA NA coding protein psRNATarget
BT088158.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:1246   UAUACUAUCCAGCGACAAUUAAAAC   1270

2.5 Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds NA coding protein psRNATarget
BT035546.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||*|||||||
targets:958   AACUAUUCAGCGACAUCUAAAAA   980

2.5 Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds NA coding protein psRNATarget
EU968044.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||*|||||||
targets:1070   AACUAUUCAGCGACAUCUAAAAA   1092

2.5 Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds NA coding protein psRNATarget
EU973028.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:1212   UAUACUAUCCAGCGACAAUUAAAAC   1236

2.5 Zea mays clone 391970 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU956063.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:1106   UAUACUAUCCAGCGACAAUUAAAAC   1130

2.5 Zea mays clone 1556707 mRNA sequence NA coding protein psRNATarget
BT068381.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:1153   UAUACUAUCCAGCGACAAUUAAAAC   1177

2.5 Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds NA coding protein psRNATarget
HI407305.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||*|||||||
targets:52   AACUAUUCAGCGACAUCUAAAAA   74

2.5 Sequence 5430 from Patent EP2074227 NA coding protein psRNATarget
JB167766.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||*|||||||
targets:52   AACUAUUCAGCGACAUCUAAAAA   74

2.5 Sequence 5430 from Patent EP2559767 NA coding protein psRNATarget
LQ239435.1
ncRNA:23   UUAAUAGGUCGCUGUUGAUUUUU   1
  ||*|||=||||||||*|||||||
targets:52   AACUAUUCAGCGACAUCUAAAAA   74

2.5 Sequence 5430 from Patent EP2985353 NA coding protein psRNATarget
LQ241224.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:45   UAUACUAUCCAGCGACAAUUAAAAC   69

2.5 Sequence 7219 from Patent EP2985353 NA coding protein psRNATarget
HI409094.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:45   UAUACUAUCCAGCGACAAUUAAAAC   69

2.5 Sequence 7219 from Patent EP2074227 NA coding protein psRNATarget
JB169555.1
ncRNA:23   UUA--AUAGGUCGCUGUUGAUUUUU   1
  *||--|||||||||||||=|||||*
targets:45   UAUACUAUCCAGCGACAAUUAAAAC   69

2.5 Sequence 7219 from Patent EP2559767 NA coding protein psRNATarget