Search result

BaseInfo

ncRNA ID	osa-miR166e-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:765724-765860 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	12 - GGAAUGUUGUCUGGUUCAAGG - 32
Stem-loop(if miRNA)	U      UU         A  GC   UU     G  U   UUUU    GUUUA      CA UGUUUCUGGG GGAAUG  GUCUGGUUC AG  CCC  AGGAU UG GAU    GAUG     UGCAUU  U |||||||||| ||||||  ||||||||| ||  |||  ||||| || |||    ||||     |||||| AUAGAGACUC CCUUAC  CGGACCAAG UC  GGG  UUCUA GC CUA    CUAC     GCGUAG  C           C      UU         C  UU   -U     G  U   ---U    ---AA      UU
Stem-loop sequence	UGUUUCUGGGUGGAAUGUUGUCUGGUUCAAGGCCCCUUAGGAUGUGUGAUUUUUGAUGGUUUAUGCAUUCAUCUUGAUGCGAACAUCUAUCUCGGAUCUUUGGGUUCUCGAACCAGGCUUCAUUCCCCUCAGAGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK071080.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   *|*||||*||||||||||||* targets:1918   GCAUGAAGCAGACAACAUUCA   1938 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023078K06, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).