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BaseInfo

ncRNA ID	osa-miR396f-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:35636546-35636721 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	9 - AUAGUUCAAGAAAGUCCUUGGAAA - 32
Stem-loop(if miRNA)	-      CUC    CA                G   ------UC     -  CAUGCUCCUCAUAUAUUGUUCUAGAUCCCAUGCAUGAUG  GCCAUG   UCCA  GGCUUUCUUGAACUGU AAC        GUGUG UG                                       C  ||||||   ||||  |||||||||||||||| |||        ||||| ||  UGGUAC   AGGU  CUGAAAGAACUUGAUA UUG        CUAGG CU                                       A G      AAA    UC                G   UUCUACCC     U  ACGCGUAGCUACUGGAUUAAGUCUAGUCUAGCUAGCUAU
Stem-loop sequence	GCCAUGCUCUCCACAGGCUUUCUUGAACUGUGAACUCGUGUGUGCAUGCUCCUCAUAUAUUGUUCUAGAUCCCAUGCAUGAUGCAUAUCGAUCGAUCUGAUCUGAAUUAGGUCAUCGAUGCGCAUCUGGAUCCCCAUCUUGUUGAUAGUUCAAGAAAGUCCUUGGAAAACAUGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015760764.1	ncRNA:24   AAAGGUUC-CUGAAAGAACUUGAUA   1   |**=||||-|=|||||||||||||| targets:1816   UACUCAAGAGGCUUUCUUGAACUAU   1840 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2-like (LOC107276082), mRNA	disease resistance protein RGA2-like(LOC107276082)	coding protein	psRNATarget

Reference

1	PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009).
2	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).