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BaseInfo

ncRNA ID osa-miR396f-5p
Species Oryza sativa
Class miRNA
Genome position Chr2:35636546-35636721 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 148 - UCUCCACAGGCUUUCUUGAACU - 169
Stem-loop(if miRNA) -      CUC    CA                G   ------UC     -  CAUGCUCCUCAUAUAUUGUUCUAGAUCCCAUGCAUGAUG
 GCCAUG   UCCA  GGCUUUCUUGAACUGU AAC        GUGUG UG                                       C
 ||||||   ||||  |||||||||||||||| |||        ||||| ||
 UGGUAC   AGGU  CUGAAAGAACUUGAUA UUG        CUAGG CU                                       A
G      AAA    UC                G   UUCUACCC     U  ACGCGUAGCUACUGGAUUAAGUCUAGUCUAGCUAGCUAU
Stem-loop sequence GCCAUGCUCUCCACAGGCUUUCUUGAACUGUGAACUCGUGUGUGCAUGCUCCUCAUAUAUUGUUCUAGAUCCCAUGCAUGAUGCAUAUCGAUCGAUCUGAUCUGAAUUAGGUCAUCGAUGCGCAUCUGGAUCCCCAUCUUGUUGAUAGUUCAAGAAAGUCCUUGGAAAACAUGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015786282.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*|
targets:418   CGUUCAAGAAAGCCUGUGGAAA   439

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 2 (LOC107276671), mRNA growth-regulating factor 2(LOC107276671) coding protein psRNATarget
CT836198.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*|
targets:424   CGUUCAAGAAAGCCUGUGGAAA   445

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence NA coding protein psRNATarget
AK063983.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*|
targets:571   CGUUCAAGAAAGCCUGUGGAAA   592

1.5 Oryza sativa Japonica Group cDNA clone:001-124-D07, full insert sequence NA coding protein psRNATarget
AK058659.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*|
targets:733   CGUUCAAGAAAGCCUGUGGAAA   754

1.5 Oryza sativa Japonica Group cDNA clone:001-018-F11, full insert sequence NA coding protein psRNATarget
XM_015768811.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*|
targets:571   CGUUCAAGAAAGCCUGUGGAAA   592

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 4 (LOC4330436), mRNA growth-regulating factor 4(LOC4330436) coding protein psRNATarget
XM_015772434.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*|
targets:732   CGUUCAAGAAAGCCUGUGGAAA   753

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 9 (LOC4333705), mRNA growth-regulating factor 9(LOC4333705) coding protein psRNATarget
XM_015768635.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*|
targets:570   CGUUCAAGAAAGCCUGUGGAAA   591

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 1 (LOC4330903), mRNA growth-regulating factor 1(LOC4330903) coding protein psRNATarget
AF201895.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*|
targets:571   CGUUCAAGAAAGCCUGUGGAAA   592

1.5 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds NA coding protein psRNATarget
AK108170.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:630   CGUUCAAGAAAGCCUGUGGAAG   651

2.5 Oryza sativa Japonica Group cDNA clone:002-139-H11, full insert sequence NA coding protein psRNATarget
FJ546694.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:625   CGUUCAAGAAAGCCUGUGGAAG   646

2.5 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 10 (GRF10) mRNA, complete cds NA coding protein psRNATarget
CT834761.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:626   CGUUCAAGAAAGCCUGUGGAAG   647

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033I10, full insert sequence NA coding protein psRNATarget
XM_015769446.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:646   CGUUCAAGAAAGCCUGUGGAAG   667

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 10 (LOC4330314), transcript variant X2, mRNA growth-regulating factor 10(LOC4330314) coding protein psRNATarget
XM_015769445.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:652   CGUUCAAGAAAGCCUGUGGAAG   673

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 10 (LOC4330314), transcript variant X1, mRNA growth-regulating factor 10(LOC4330314) coding protein psRNATarget
XM_015786118.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||**
targets:620   CGUUCAAGAAAGCCUGUGGAAU   641

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X3, mRNA growth-regulating factor 5(LOC4339928) coding protein psRNATarget
XM_015786116.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||**
targets:620   CGUUCAAGAAAGCCUGUGGAAU   641

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X1, mRNA growth-regulating factor 5(LOC4339928) coding protein psRNATarget
AK241439.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:407   CGUUCAAGAAAGCCUGUGGAAG   428

2.5 Oryza sativa Japonica Group cDNA, clone: J065162G19, full insert sequence NA coding protein psRNATarget
XM_015778847.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:712   CGUUCAAGAAAGCCUGUGGAAG   733

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X2, mRNA growth-regulating factor 3(LOC4336879) coding protein psRNATarget
FJ546693.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:497   CGUUCAAGAAAGCCUGUGGAAG   518

2.5 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds NA coding protein psRNATarget
AK103508.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||**
targets:607   CGUUCAAGAAAGCCUGUGGAAU   628

2.5 Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence NA coding protein psRNATarget
XM_015786117.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||**
targets:620   CGUUCAAGAAAGCCUGUGGAAU   641

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X2, mRNA growth-regulating factor 5(LOC4339928) coding protein psRNATarget
XM_015786119.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||**
targets:620   CGUUCAAGAAAGCCUGUGGAAU   641

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X4, mRNA growth-regulating factor 5(LOC4339928) coding protein psRNATarget
XM_015778846.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:711   CGUUCAAGAAAGCCUGUGGAAG   732

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X1, mRNA growth-regulating factor 3(LOC4336879) coding protein psRNATarget
XM_015778848.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  *|||||||||||||||||||*=
targets:710   CGUUCAAGAAAGCCUGUGGAAG   731

2.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X3, mRNA growth-regulating factor 3(LOC4336879) coding protein psRNATarget
XM_015779290.1
ncRNA:22   UCAAGUUCUUUCGGACACCUCU   1
  **||||||||||||||||||*|
targets:82   CUUUCAAGAAAGCCUGUGGAAA   103

1.5 PREDICTED: Oryza sativa Japonica Group growth-regulating factor 2-like (LOC107280619), mRNA growth-regulating factor 2-like(LOC107280619) coding protein psRNATarget

Reference

1 PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds";
Xue LJ, Zhang JJ, Xue HW;
Nucleic Acids Res. 37:916-930(2009).
2 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).
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