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BaseInfo

ncRNA ID	osa-miR172d-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:35143537-35143666 [-]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	90 - GCAGCACCAUCAAGAUUCAC - 109
Stem-loop(if miRNA)	AAAC     -   C    A         C           A     -----   U  U  CUAAA  A     AGUCG GUG UUGC GGUGCAGCA CAUCAAGAUUC CAUCG     AGU CA CC     CG G     ||||| ||| |||| ||||||||| ||||||||||| |||||     ||| || ||     ||     UCAGC CGC AACG CUACGUCGU GUAGUUCUAAG GUAGU     UCA GU GG     GC A -UCA     U   A    A         A           A     GUAUA   -  C  UUGGA  U
Stem-loop sequence	AAACAGUCGGUGCUUGCAGGUGCAGCACCAUCAAGAUUCACAUCGAGUUCAUCCCUAAACGAGAUCGAGGUUGGCUGACUAUAUGUGAUGAGAAUCUUGAUGAUGCUGCAUCAGCAAACGCUCGACUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK102916.1	ncRNA:20   CACUUAGAACUACCACGACG   1   |||=|||||||||*|||||| targets:342   GUGGAUCUUGAUGCUGCUGC   361 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033114A07, full insert sequence	NA	coding protein	psRNATarget
AK102215.1	ncRNA:20   CACUUAGAACUACCACGACG   1   |||=|||||||||*|||||| targets:275   GUGGAUCUUGAUGCUGCUGC   294 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033087K21, full insert sequence	NA	coding protein	psRNATarget
AK120210.1	ncRNA:20   CACUUAGAACUACCACGACG   1   |||=|||||||||*|||||| targets:505   GUGGAUCUUGAUGCUGCUGC   524 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013038N24, full insert sequence	NA	coding protein	psRNATarget
XM_015794804.1	ncRNA:20   CACUUAGAACUACCACGACG   1   |||=|||||||||*|||||| targets:520   GUGGAUCUUGAUGCUGCUGC   539 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group myosin-binding protein 1 (LOC4327160), mRNA	myosin-binding protein 1(LOC4327160)	coding protein	psRNATarget
AK107102.1	ncRNA:20   CACUUAGAACUACCACGACG   1   *||*||||||||||||=||| targets:435   UUGCAUCUUGAUGGUGUUGC   454 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-122-A05, full insert sequence	NA	coding protein	psRNATarget
AK065478.1	ncRNA:20   CACUUAGAACUACCACGACG   1   *||*||||||||||||=||| targets:1129   UUGCAUCUUGAUGGUGUUGC   1148 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013024O22, full insert sequence	NA	coding protein	psRNATarget
XM_015788207.1	ncRNA:20   CACUUAGAACUACCACGACG   1   *||*||||||||||||=||| targets:1213   UUGCAUCUUGAUGGUGUUGC   1232 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat MAX2 homolog (LOC9272469), transcript variant X1, mRNA	F-box/LRR-repeat MAX2 homolog(LOC9272469)	coding protein	psRNATarget
XM_015788208.1	ncRNA:20   CACUUAGAACUACCACGACG   1   *||*||||||||||||=||| targets:1213   UUGCAUCUUGAUGGUGUUGC   1232 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat MAX2 homolog (LOC9272469), transcript variant X2, mRNA	F-box/LRR-repeat MAX2 homolog(LOC9272469)	coding protein	psRNATarget

Reference

1	PMID:15685364 "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"; Li Y, Li W, Jin YX; Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).