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BaseInfo

ncRNA ID	osa-miR172d-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:35143537-35143666 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - AGAAUCUUGAUGAUGCUGCAU - 40
Stem-loop(if miRNA)	AAAC     -   C    A         C           A     -----   U  U  CUAAA  A     AGUCG GUG UUGC GGUGCAGCA CAUCAAGAUUC CAUCG     AGU CA CC     CG G     ||||| ||| |||| ||||||||| ||||||||||| |||||     ||| || ||     ||     UCAGC CGC AACG CUACGUCGU GUAGUUCUAAG GUAGU     UCA GU GG     GC A -UCA     U   A    A         A           A     GUAUA   -  C  UUGGA  U
Stem-loop sequence	AAACAGUCGGUGCUUGCAGGUGCAGCACCAUCAAGAUUCACAUCGAGUUCAUCCCUAAACGAGAUCGAGGUUGGCUGACUAUAUGUGAUGAGAAUCUUGAUGAUGCUGCAUCAGCAAACGCUCGACUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF576372.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:392   CUGCAGCAUCAUCAGGAUUCU   412 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) clone OSS-97-192-D5 transcription factor ap2d23-like protein mRNA, partial cds	NA	coding protein	psRNATarget
CT835249.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:358   CUGCAGCAUCAUCAGGAUUCU   378 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P21, full insert sequence	NA	coding protein	psRNATarget
CT836468.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:658   CUGCAGCAUCAUCAGGAUUCU   678 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN050I21, full insert sequence	NA	coding protein	psRNATarget
AY685113.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1193   CUGCAGCAUCAUCAGGAUUCU   1213 Target Full Sequence	1.5	Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds	NA	coding protein	psRNATarget
CT828346.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1183   CUGCAGCAUCAUCAGGAUUCU   1203 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA215G24, full insert sequence	NA	coding protein	psRNATarget
AY685117.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1412   CUGCAGCAUCAUCAGGAUUCU   1432 Target Full Sequence	1.5	Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds	NA	coding protein	psRNATarget
DQ374663.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1204   CUGCAGCAUCAUCAGGAUUCU   1224 Target Full Sequence	1.5	Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds	NA	coding protein	psRNATarget
XM_015792406.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1305   CUGCAGCAUCAUCAGGAUUCU   1325 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4342787), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC4342787)	coding protein	psRNATarget
AK111874.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1403   CUGCAGCAUCAUCAGGAUUCU   1423 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033046C12, full insert sequence	NA	coding protein	psRNATarget
XM_015772884.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1750   CUGCAGCAUCAUCAGGAUUCU   1770 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4334582), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC4334582)	coding protein	psRNATarget
CT836522.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1756   CUGCAGCAUCAUCAGGAUUCU   1776 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA250P08, full insert sequence	NA	coding protein	psRNATarget
XM_015772883.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1762   CUGCAGCAUCAUCAGGAUUCU   1782 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4334582), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC4334582)	coding protein	psRNATarget
CT831975.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1463   CUGCAGCAUCAUCAGGAUUCU   1483 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence	NA	coding protein	psRNATarget
XM_015783844.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1926   CUGCAGCAUCAUCAGGAUUCU   1946 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4337654), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC4337654)	coding protein	psRNATarget
XM_015783843.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1971   CUGCAGCAUCAUCAGGAUUCU   1991 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4337654), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC4337654)	coding protein	psRNATarget
XM_015792405.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1403   CUGCAGCAUCAUCAGGAUUCU   1423 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC4342787), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC4342787)	coding protein	psRNATarget
XM_015787226.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1355   CUGCAGCAUCAUCAGGAUUCC   1375 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor RAP2-7 (LOC9271266), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC9271266)	coding protein	psRNATarget
XM_015787225.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1411   CUGCAGCAUCAUCAGGAUUCC   1431 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor RAP2-7 (LOC9271266), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC9271266)	coding protein	psRNATarget
AK242957.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1481   CUGCAGCAUCAUCAGGAUUCC   1501 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence	NA	coding protein	psRNATarget
AK121346.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||*|||||* targets:804   CUGCAGCAUCAUCACGAUUCC   824 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023121E19, full insert sequence	NA	coding protein	psRNATarget
AK099991.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||*|||||* targets:2390   CUGCAGCAUCAUCACGAUUCC   2410 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013131A17, full insert sequence	NA	coding protein	psRNATarget
XM_015781362.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||*|||||* targets:1863   CUGCAGCAUCAUCACGAUUCC   1883 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC9269072), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC9269072)	coding protein	psRNATarget
XM_015781363.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||*|||||* targets:1865   CUGCAGCAUCAUCACGAUUCC   1885 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AP2-like ethylene-responsive transcription factor TOE3 (LOC9269072), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC9269072)	coding protein	psRNATarget
XM_015782948.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |*|||*=|||||||||||||* targets:385   AAGCAUUAUCAUCAAGAUUCC   405 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 65-kDa microtubule-associated protein 1-like (LOC107276112), transcript variant X2, mRNA	65-kDa microtubule-associated protein 1-like(LOC107276112)	coding protein	psRNATarget
XM_015782947.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |*|||*=|||||||||||||* targets:385   AAGCAUUAUCAUCAAGAUUCC   405 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 65-kDa microtubule-associated protein 1-like (LOC107276112), transcript variant X1, mRNA	65-kDa microtubule-associated protein 1-like(LOC107276112)	coding protein	psRNATarget
XM_015782949.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |*|||*=|||||||||||||* targets:553   AAGCAUUAUCAUCAAGAUUCC   573 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 65-kDa microtubule-associated protein 1-like (LOC107276112), transcript variant X3, mRNA	65-kDa microtubule-associated protein 1-like(LOC107276112)	coding protein	psRNATarget
XM_015782950.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |*|||*=|||||||||||||* targets:603   AAGCAUUAUCAUCAAGAUUCC   623 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 65-kDa microtubule-associated protein 1-like (LOC107276112), transcript variant X4, mRNA	65-kDa microtubule-associated protein 1-like(LOC107276112)	coding protein	psRNATarget

Reference

1	PMID:15685364 "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"; Li Y, Li W, Jin YX; Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).