| ncRNA ID | osa-miR396c-3p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr2:34287873-34288013 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 9 - GGUCAAGAAAGCUGUGGGAAG - 29 |
| Stem-loop(if miRNA) |
U GC A - --G A -----A AUU GA GAU GCCAU CUUUCCACAGCUUUCUUGA CUUCU CUUGU CCUC CUC CUUUC ACUG GA A ||||| ||||||||||||||||||| ||||| ||||| |||| ||| ||||| |||| || CGGUA GAAGGGUGUCGAAAGAACU GGAGA GAACG GGAG GGG GAAGG UGAC CU U A AA G A UGA A AUAUUC --- UA ACG |
| Stem-loop sequence | UGCCAUGCCUUUCCACAGCUUUCUUGAACUUCUCUUGUGCCUCACUCACUUUCAUUACUGGAGAGAUAUGCAUCAUCAGUGGAAGCUUAUAGGGAGAGGAGUGCAAGAAGAGGGUCAAGAAAGCUGUGGGAAGAAAUGGCA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK062523.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:001-104-D07, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| CT829989.1 |
|
2.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA004M09, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
| 2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |