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BaseInfo

ncRNA ID	osa-miR396c-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:34287873-34288013 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	111 - UUCCACAGCUUUCUUGAACUU - 131
Stem-loop(if miRNA)	U     GC                   A     -     --G    A   -----A     AUU    GA  GAU  GCCAU  CUUUCCACAGCUUUCUUGA CUUCU CUUGU   CCUC CUC      CUUUC   ACUG  GA   A  |||||  ||||||||||||||||||| ||||| |||||   |||| |||      |||||   ||||  ||  CGGUA  GAAGGGUGUCGAAAGAACU GGAGA GAACG   GGAG GGG      GAAGG   UGAC  CU   U A     AA                   G     A     UGA    A   AUAUUC     ---    UA  ACG
Stem-loop sequence	UGCCAUGCCUUUCCACAGCUUUCUUGAACUUCUCUUGUGCCUCACUCACUUUCAUUACUGGAGAGAUAUGCAUCAUCAGUGGAAGCUUAUAGGGAGAGGAGUGCAAGAAGAGGGUCAAGAAAGCUGUGGGAAGAAAUGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK062523.1	ncRNA:21   UUCAAGUUCUUUCGACACCUU   1   |=|*|||||||||||||||=| targets:423   AGGGUCAAGAAAGCUGUGGGA   443 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-104-D07, full insert sequence	NA	coding protein	psRNATarget
CT829989.1	ncRNA:21   UUCAAGUUCUUUCGACACCUU   1   |=|*|||||||||||||||=| targets:330   AGGGUCAAGAAAGCUGUGGGA   350 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA004M09, full insert sequence	NA	coding protein	psRNATarget
AK108170.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:629   CCGUUCAAGAAAGCCUGUGGAA   650 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-139-H11, full insert sequence	NA	coding protein	psRNATarget
FJ546694.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:624   CCGUUCAAGAAAGCCUGUGGAA   645 Target Full Sequence	3.0	Oryza sativa Indica Group cultivar IR58 growth-regulating factor 10 (GRF10) mRNA, complete cds	NA	coding protein	psRNATarget
CT834761.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:625   CCGUUCAAGAAAGCCUGUGGAA   646 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033I10, full insert sequence	NA	coding protein	psRNATarget
XM_015769446.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:645   CCGUUCAAGAAAGCCUGUGGAA   666 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 10 (LOC4330314), transcript variant X2, mRNA	growth-regulating factor 10(LOC4330314)	coding protein	psRNATarget
XM_015769445.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:651   CCGUUCAAGAAAGCCUGUGGAA   672 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 10 (LOC4330314), transcript variant X1, mRNA	growth-regulating factor 10(LOC4330314)	coding protein	psRNATarget
AK058659.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:732   CCGUUCAAGAAAGCCUGUGGAA   753 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-018-F11, full insert sequence	NA	coding protein	psRNATarget
XM_015760217.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:863   UCGUUCAAGAAAGCAUGUGGAA   884 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 8 (LOC4350711), mRNA	growth-regulating factor 8(LOC4350711)	coding protein	psRNATarget
AK241557.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:732   CCGUUCAAGAAAGCAUGUGGAA   753 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence	NA	coding protein	psRNATarget
XM_015772434.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:731   CCGUUCAAGAAAGCCUGUGGAA   752 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 9 (LOC4333705), mRNA	growth-regulating factor 9(LOC4333705)	coding protein	psRNATarget
AK073578.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:420   CCGUUCAAGAAAGCAUGUGGAA   441 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence	NA	coding protein	psRNATarget
XM_015763499.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:761   CCGUUCAAGAAAGCAUGUGGAA   782 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 7 (LOC9268363), transcript variant X2, mRNA	growth-regulating factor 7(LOC9268363)	coding protein	psRNATarget
XM_015763498.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:818   CCGUUCAAGAAAGCAUGUGGAA   839 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 7 (LOC9268363), transcript variant X1, mRNA	growth-regulating factor 7(LOC9268363)	coding protein	psRNATarget
AK103055.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:1321   UCGUUCAAGAAAGCAUGUGGAA   1342 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence	NA	coding protein	psRNATarget
XM_015773144.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:777   CCGUUCAAGAAAGCAUGUGGAA   798 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 6 (LOC4333990), mRNA	growth-regulating factor 6(LOC4333990)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).