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BaseInfo

ncRNA ID	osa-miR396a-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:34280384-34280537 [+]
Reference genome	MSU7
Source	miRBase
Length	20
Mature sequence(if miRNA)	126 - GUUCAAUAAAGCUGUGGGAA - 145
Stem-loop(if miRNA)	UG  C            C         -A        G  UAAUCCCUUUGGUUAAUUGUGAUCUGGUCUCU CUUUG  AU UUCCACAGCUUU UUGAACUGC  CGCAUGAU AA                                G |||||  || |||||||||||| |||||||||  |||||||| || GAGAC  UA AGGGUGUCGAAA AACUUGACG  AGAGACUA CG                                A      GU  A            U         AG        -  GUUACGUUGGCUAGCUCAGAUUGAUGCUAGAG
Stem-loop sequence	CUUUGUGAUCUUCCACAGCUUUCUUGAACUGCACGCAUGAUGAAUAAUCCCUUUGGUUAAUUGUGAUCUGGUCUCUGAGAGAUCGUAGUUAGACUCGAUCGGUUGCAUUGGCAUCAGAGAGAGCAGUUCAAUAAAGCUGUGGGAAAUUGCAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK062523.1	ncRNA:20   AAGGGUGUCGAAAUAACUUG   1   ||=||||||||||*|||||| targets:322   UUUCCACAGCUUUCUUGAAC   341 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-104-D07, full insert sequence	NA	coding protein	psRNATarget
CT829989.1	ncRNA:20   AAGGGUGUCGAAAUAACUUG   1   ||=||||||||||*|||||| targets:229   UUUCCACAGCUUUCUUGAAC   248 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA004M09, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).