Search result

BaseInfo

ncRNA ID	osa-miR396a-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:34280384-34280537 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUCCACAGCUUUCUUGAACUG - 31
Stem-loop(if miRNA)	UG  C            C         -A        G  UAAUCCCUUUGGUUAAUUGUGAUCUGGUCUCU CUUUG  AU UUCCACAGCUUU UUGAACUGC  CGCAUGAU AA                                G |||||  || |||||||||||| |||||||||  |||||||| || GAGAC  UA AGGGUGUCGAAA AACUUGACG  AGAGACUA CG                                A      GU  A            U         AG        -  GUUACGUUGGCUAGCUCAGAUUGAUGCUAGAG
Stem-loop sequence	CUUUGUGAUCUUCCACAGCUUUCUUGAACUGCACGCAUGAUGAAUAAUCCCUUUGGUUAAUUGUGAUCUGGUCUCUGAGAGAUCGUAGUUAGACUCGAUCGGUUGCAUUGGCAUCAGAGAGAGCAGUUCAAUAAAGCUGUGGGAAAUUGCAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK108170.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:629   CCGUUCAAGAAAGCCUGUGGAA   650 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-139-H11, full insert sequence	NA	coding protein	psRNATarget
FJ546694.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:624   CCGUUCAAGAAAGCCUGUGGAA   645 Target Full Sequence	3.0	Oryza sativa Indica Group cultivar IR58 growth-regulating factor 10 (GRF10) mRNA, complete cds	NA	coding protein	psRNATarget
CT834761.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:625   CCGUUCAAGAAAGCCUGUGGAA   646 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033I10, full insert sequence	NA	coding protein	psRNATarget
XM_015769446.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:645   CCGUUCAAGAAAGCCUGUGGAA   666 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 10 (LOC4330314), transcript variant X2, mRNA	growth-regulating factor 10(LOC4330314)	coding protein	psRNATarget
XM_015769445.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:651   CCGUUCAAGAAAGCCUGUGGAA   672 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 10 (LOC4330314), transcript variant X1, mRNA	growth-regulating factor 10(LOC4330314)	coding protein	psRNATarget
XM_015786282.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:417   CCGUUCAAGAAAGCCUGUGGAA   438 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 2 (LOC107276671), mRNA	growth-regulating factor 2(LOC107276671)	coding protein	psRNATarget
CT836198.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:423   CCGUUCAAGAAAGCCUGUGGAA   444 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence	NA	coding protein	psRNATarget
XM_015786118.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:619   CCGUUCAAGAAAGCCUGUGGAA   640 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X3, mRNA	growth-regulating factor 5(LOC4339928)	coding protein	psRNATarget
XM_015786116.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:619   CCGUUCAAGAAAGCCUGUGGAA   640 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X1, mRNA	growth-regulating factor 5(LOC4339928)	coding protein	psRNATarget
AK241439.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:406   CCGUUCAAGAAAGCCUGUGGAA   427 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065162G19, full insert sequence	NA	coding protein	psRNATarget
XM_015778847.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:711   CCGUUCAAGAAAGCCUGUGGAA   732 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X2, mRNA	growth-regulating factor 3(LOC4336879)	coding protein	psRNATarget
FJ546693.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:496   CCGUUCAAGAAAGCCUGUGGAA   517 Target Full Sequence	3.0	Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds	NA	coding protein	psRNATarget
AK063983.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:570   CCGUUCAAGAAAGCCUGUGGAA   591 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-124-D07, full insert sequence	NA	coding protein	psRNATarget
AK103508.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:606   CCGUUCAAGAAAGCCUGUGGAA   627 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033131E19, full insert sequence	NA	coding protein	psRNATarget
XM_015768811.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:570   CCGUUCAAGAAAGCCUGUGGAA   591 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 4 (LOC4330436), mRNA	growth-regulating factor 4(LOC4330436)	coding protein	psRNATarget
XM_015786117.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:619   CCGUUCAAGAAAGCCUGUGGAA   640 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X2, mRNA	growth-regulating factor 5(LOC4339928)	coding protein	psRNATarget
XM_015786119.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:619   CCGUUCAAGAAAGCCUGUGGAA   640 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 5 (LOC4339928), transcript variant X4, mRNA	growth-regulating factor 5(LOC4339928)	coding protein	psRNATarget
XM_015778846.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:710   CCGUUCAAGAAAGCCUGUGGAA   731 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X1, mRNA	growth-regulating factor 3(LOC4336879)	coding protein	psRNATarget
XM_015778848.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:709   CCGUUCAAGAAAGCCUGUGGAA   730 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 3 (LOC4336879), transcript variant X3, mRNA	growth-regulating factor 3(LOC4336879)	coding protein	psRNATarget
XM_015768635.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:569   CCGUUCAAGAAAGCCUGUGGAA   590 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group growth-regulating factor 1 (LOC4330903), mRNA	growth-regulating factor 1(LOC4330903)	coding protein	psRNATarget
AF201895.1	ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1   |*||||||||||||-||||||| targets:570   CCGUUCAAGAAAGCCUGUGGAA   591 Target Full Sequence	3.0	Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds	NA	coding protein	psRNATarget
AK062523.1	ncRNA:21   GUCAAGUUCUUUCGACACCUU   1   *=|*|||||||||||||||=| targets:423   AGGGUCAAGAAAGCUGUGGGA   443 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-104-D07, full insert sequence	NA	coding protein	psRNATarget
CT829989.1	ncRNA:21   GUCAAGUUCUUUCGACACCUU   1   *=|*|||||||||||||||=| targets:330   AGGGUCAAGAAAGCUGUGGGA   350 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA004M09, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).