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BaseInfo

ncRNA ID osa-miR164d
Species Oryza sativa
Class miRNA
Genome position Chr2:33143567-33143660 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 64 - UGGAGAAGCAGGGCACGUGCU - 84
Stem-loop(if miRNA) CAAA              C  G         CGACG     G      G
    CCGUGCUGGAGAAG AG GCACGUGCU     GCGGG CUGGCU G
    |||||||||||||| || |||||||||     ||||| ||||||
    GGUACGACCUCUUC UC CGUGUACGA     CGUUC GGCCGG C
CUUC              C  G         -----     -      C
Stem-loop sequence CAAACCGUGCUGGAGAAGCAGGGCACGUGCUCGACGGCGGGGCUGGCUGGCCGGCCGGCUUGCAGCAUGUGCGCUCCUUCUCCAGCAUGGCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015768467.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  |||||||||||||||||||||
targets:3923   AGCACGUGCCCUGCUUCUCCA   3943

0.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 18 (LOC9267442), mRNA zinc finger CCCH domain-containing protein 18(LOC9267442) coding protein psRNATarget
BT130279.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *||||||||||||||||||||
targets:233   UGCACGUGCCCUGCUUCUCCA   253

0.0 Oryza sativa clone RRlibD00893 mRNA sequence NA coding protein psRNATarget
JC611934.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  ||||*||||||||||||||||
targets:668   AGCAAGUGCCCUGCUUCUCCA   688

1.0 Sequence 96 from Patent WO2014106838 NA coding protein psRNATarget
XM_015787636.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  ||||*||||||||||||||||
targets:747   AGCAAGUGCCCUGCUUCUCCA   767

1.0 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 21/22 (LOC4341823), transcript variant X2, mRNA NAC domain-containing protein 21/22(LOC4341823) coding protein psRNATarget
AK063648.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  ||||*||||||||||||||||
targets:954   AGCAAGUGCCCUGCUUCUCCA   974

1.0 Oryza sativa Japonica Group cDNA clone:001-119-A03, full insert sequence NA coding protein psRNATarget
AK071464.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  ||||*||||||||||||||||
targets:912   AGCAAGUGCCCUGCUUCUCCA   932

1.0 Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence NA coding protein psRNATarget
XM_015787635.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  ||||*||||||||||||||||
targets:970   AGCAAGUGCCCUGCUUCUCCA   990

1.0 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 21/22 (LOC4341823), transcript variant X1, mRNA NAC domain-containing protein 21/22(LOC4341823) coding protein psRNATarget
XM_015765090.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  ||||*||||||||||||||||
targets:931   AGCAAGUGCCCUGCUUCUCCA   951

1.0 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 21/22 (LOC4352763), transcript variant X2, mRNA NAC domain-containing protein 21/22(LOC4352763) coding protein psRNATarget
XM_015765089.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  ||||*||||||||||||||||
targets:934   AGCAAGUGCCCUGCUUCUCCA   954

1.0 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 21/22 (LOC4352763), transcript variant X1, mRNA NAC domain-containing protein 21/22(LOC4352763) coding protein psRNATarget
XM_015787089.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  |||*|||||||||||||||||
targets:1001   AGCUCGUGCCCUGCUUCUCCA   1021

1.0 PREDICTED: Oryza sativa Japonica Group protein CUP-SHAPED COTYLEDON 1 (LOC4340969), mRNA protein CUP-SHAPED COTYLEDON 1(LOC4340969) coding protein psRNATarget
DQ520641.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:733   CGCACGUGACCUGCUUCUCCA   753

1.5 Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds NA coding protein psRNATarget
AB028180.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:834   CGCACGUGACCUGCUUCUCCA   854

1.5 Oryza sativa mRNA for OsNAC1 protein, complete cds NA coding protein psRNATarget
AK108080.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:741   CGCACGUGACCUGCUUCUCCA   761

1.5 Oryza sativa Japonica Group cDNA clone:002-138-E10, full insert sequence NA coding protein psRNATarget
AB028181.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:785   CGCACGUGACCUGCUUCUCCA   805

1.5 Oryza sativa mRNA for OsNAC2 protein, complete cds NA coding protein psRNATarget
AK104626.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:790   CGCACGUGACCUGCUUCUCCA   810

1.5 Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence NA coding protein psRNATarget
AK061745.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:790   CGCACGUGACCUGCUUCUCCA   810

1.5 Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence NA coding protein psRNATarget
XM_015778438.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:820   CGCACGUGACCUGCUUCUCCA   840

1.5 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 92 (LOC4336052), transcript variant X2, mRNA NAC domain-containing protein 92(LOC4336052) coding protein psRNATarget
XM_015778436.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:839   CGCACGUGACCUGCUUCUCCA   859

1.5 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 92 (LOC4336052), transcript variant X1, mRNA NAC domain-containing protein 92(LOC4336052) coding protein psRNATarget
XM_015767904.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:921   CGCACGUGACCUGCUUCUCCA   941

1.5 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 92 (LOC4329768), transcript variant X2, mRNA NAC domain-containing protein 92(LOC4329768) coding protein psRNATarget
XM_015767903.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:924   CGCACGUGACCUGCUUCUCCA   944

1.5 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 92 (LOC4329768), transcript variant X1, mRNA NAC domain-containing protein 92(LOC4329768) coding protein psRNATarget
AK071020.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:914   CGCACGUGACCUGCUUCUCCA   934

1.5 Oryza sativa Japonica Group cDNA clone:J023080H09, full insert sequence NA coding protein psRNATarget
CT828636.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:1295   CGCACGUGACCUGCUUCUCCA   1315

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012A02, full insert sequence NA coding protein psRNATarget
CT830107.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||||||*||||||||||||
targets:1672   CGCACGUGACCUGCUUCUCCA   1692

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence NA coding protein psRNATarget
JB164438.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||=|||||||*||||||||
targets:157   UGCAUGUGCCCUUCUUCUCCA   177

2.5 Sequence 2102 from Patent EP2559767 NA coding protein psRNATarget
HI403977.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||=|||||||*||||||||
targets:157   UGCAUGUGCCCUUCUUCUCCA   177

2.5 Sequence 2102 from Patent EP2074227 NA coding protein psRNATarget
LQ236107.1
ncRNA:21   UCGUGCACGGGACGAAGAGGU   1
  *|||=|||||||*||||||||
targets:157   UGCAUGUGCCCUUCUUCUCCA   177

2.5 Sequence 2102 from Patent EP2985353 NA coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
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