Search result

BaseInfo

ncRNA ID osa-miR166h-5p
Species Oryza sativa
Class miRNA
Genome position Chr2:32435174-32435292 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 87 - GGAAUGUUGGCUGGCUCGAGG - 107
Stem-loop(if miRNA) GG                UU G    CU   G  A       CUUAAU   UCU     GA
  UGGCUUGUGGGGAAUG  G CUGG  CGA GU UCCACAU      UCC   CCGGC  U
  ||||||||||||||||  | ||||  ||| || |||||||      |||   |||||
  GCCGAACGCUCCUUAC  C GACC  GCU CG AGGUGUG      GGG   GGCCG  C
UA                UU G    AG   G  A       -----C   CUC     AG
Stem-loop sequence GGUGGCUUGUGGGGAAUGUUGGCUGGCUCGAGGUAUCCACAUCUUAAUUCCUCUCCGGCGAUCGAGCCGGCUCGGGCGUGUGGAAGCGUCGGACCAGGCUUCAUUCCUCGCAAGCCGAU

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).