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BaseInfo

ncRNA ID osa-miR166h-3p
Species Oryza sativa
Class miRNA
Genome position Chr2:32435174-32435292 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UCGGACCAGGCUUCAUUCCUC - 31
Stem-loop(if miRNA) GG                UU G    CU   G  A       CUUAAU   UCU     GA
  UGGCUUGUGGGGAAUG  G CUGG  CGA GU UCCACAU      UCC   CCGGC  U
  ||||||||||||||||  | ||||  ||| || |||||||      |||   |||||
  GCCGAACGCUCCUUAC  C GACC  GCU CG AGGUGUG      GGG   GGCCG  C
UA                UU G    AG   G  A       -----C   CUC     AG
Stem-loop sequence GGUGGCUUGUGGGGAAUGUUGGCUGGCUCGAGGUAUCCACAUCUUAAUUCCUCUCCGGCGAUCGAGCCGGCUCGGGCGUGUGGAAGCGUCGGACCAGGCUUCAUUCCUCGCAAGCCGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288397.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |||||||||||||||*|||||
targets:1245   GAGGAAUGAAGCCUGAUCCGA   1265

1.5 Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence NA coding protein psRNATarget
AB374207.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:834   CUGGGAUGAAGCCUGGUCCGG   854

2.0 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds NA coding protein psRNATarget
XM_015777224.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:715   CUGGGAUGAAGCCUGGUCCGG   735

2.0 PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX10 (LOC4331345), transcript variant X2, mRNA homeobox-leucine zipper protein HOX10(LOC4331345) coding protein psRNATarget
AK102830.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:697   CUGGGAUGAAGCCUGGUCCGG   717

2.0 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence NA coding protein psRNATarget
EU368712.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:760   UUGGGAUGAAGCCUGGUCCGG   780

2.0 Oryza sativa Indica Group SKIP interacting protein 22 (SIP22) mRNA, complete cds NA coding protein psRNATarget
XM_015769204.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:834   CUGGGAUGAAGCCUGGUCCGG   854

2.0 PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX29 (LOC4327348), mRNA homeobox-leucine zipper protein HOX29(LOC4327348) coding protein psRNATarget
AK103284.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:956   UUGGGAUGAAGCCUGGUCCGG   976

2.0 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence NA coding protein psRNATarget
XM_015776998.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:950   UUGGGAUGAAGCCUGGUCCGG   970

2.0 PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX32 (LOC4333544), mRNA homeobox-leucine zipper protein HOX32(LOC4333544) coding protein psRNATarget
AK102183.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:874   UUGGGAUGAAGCCUGGUCCGG   894

2.0 Oryza sativa Japonica Group cDNA clone:J033086M14, full insert sequence NA coding protein psRNATarget
AY423716.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:850   CUGGGAUGAAGCCUGGUCCGG   870

2.0 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox9 mRNA, complete cds NA coding protein psRNATarget
XM_015765330.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:936   UUGGGAUGAAGCCUGGUCCGG   956

2.0 PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX33 (LOC4352777), mRNA homeobox-leucine zipper protein HOX33(LOC4352777) coding protein psRNATarget
AK102603.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:921   CUGGGAUGAAGCCUGGUCCGG   941

2.0 Oryza sativa Japonica Group cDNA clone:J033098N12, full insert sequence NA coding protein psRNATarget
AK102378.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:973   CUGGGAUGAAGCCUGGUCCGG   993

2.0 Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence NA coding protein psRNATarget
AY425991.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:973   CUGGGAUGAAGCCUGGUCCGG   993

2.0 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds NA coding protein psRNATarget
XM_015777223.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:979   CUGGGAUGAAGCCUGGUCCGG   999

2.0 PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX10 (LOC4331345), transcript variant X1, mRNA homeobox-leucine zipper protein HOX10(LOC4331345) coding protein psRNATarget
XM_015759415.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:981   CUGGGAUGAAGCCUGGUCCGG   1001

2.0 PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper protein HOX9 (LOC4348919), mRNA homeobox-leucine zipper protein HOX9(LOC4348919) coding protein psRNATarget
XM_015778639.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=*|||*|||||||||||||*
targets:394   GGUGAACGAAGCCUGGUCCGU   414

3.0 PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 49 (LOC4336717), mRNA protein DETOXIFICATION 49(LOC4336717) coding protein psRNATarget
AK241934.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=*|||*|||||||||||||*
targets:401   GGUGAACGAAGCCUGGUCCGU   421

3.0 Oryza sativa Japonica Group cDNA, clone: J075082P08, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).
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