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BaseInfo

ncRNA ID osa-miR166k-5p
Species Oryza sativa
Class miRNA
Genome position Chr2:32435003-32435129 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 95 - GGUUUGUUGUCUGGCUCGAGG - 115
Stem-loop(if miRNA) AUUA          U   UU      CU      A      -A    GGUUUCUCCUUUCCUA
    GGUUAAGGGG UUG  GUCUGG  CGAGGC UCCGGG  CUCC                C
    |||||||||| |||  ||||||  |||||| ||||||  ||||                U
    CCAAUUUCCC AAC  CGGACC  GCUCCG AGGCUC  GCGG                G
CGUA          U   UU      AG      -      GA    CCUUUAAUCCGCGGAG
Stem-loop sequence AUUAGGUUAAGGGGUUUGUUGUCUGGCUCGAGGCAUCCGGGACUCCGGUUUCUCCUUUCCUACUGGAGGCGCCUAAUUUCCGGCGAGCUCGGAGCCUCGGACCAGGCUUCAAUCCCUUUAACCAUGC

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).