Search result

BaseInfo

ncRNA ID	osa-miR168b
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:27336428-27336533 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - AGGCUUGGUGCAGCUCGGGAA - 31
Stem-loop(if miRNA)	--U   CUU U    CU  G      U     ACU  UCU  A     -   C      GGU   G GAGG  UG UGCAGC CGGGA   GU   UG UGGAC UGG AGG    |||   | ||||  || |||||| |||||   ||   || ||||| ||| ||A    CCG   C CUCC  AC GUGUUG GUCCU   CG   AC ACCUG ACC UCA UUG   -UU -    UU  G      U     CAC  -UC  C     U   -
Stem-loop sequence	UGGUCUUGUGAGGCUUGGUGCAGCUCGGGAACUGUUCUUGAUGGACUGGCAGGAACUCCAUGUCCACCACUGCCACUCCUGUGUUGUGGCAUUCCUCCUUGCCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK111553.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||| targets:604   UUCCCGAGCUGCACCAAGCCU   624 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013050D21, full insert sequence	NA	coding protein	psRNATarget
XM_015770611.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||| targets:663   UUCCCGAGCUGCACCAAGCCU   683 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein argonaute 1A (LOC4330281), transcript variant X2, mRNA	protein argonaute 1A(LOC4330281)	coding protein	psRNATarget
XM_015770612.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||| targets:678   UUCCCGAGCUGCACCAAGCCU   698 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein argonaute 1A (LOC4330281), transcript variant X3, mRNA	protein argonaute 1A(LOC4330281)	coding protein	psRNATarget
XM_015770610.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||| targets:704   UUCCCGAGCUGCACCAAGCCU   724 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein argonaute 1A (LOC4330281), transcript variant X1, mRNA	protein argonaute 1A(LOC4330281)	coding protein	psRNATarget
AK102911.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||* targets:698   UUCCCGAGCUGCACCAAGCCC   718 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033113J23, full insert sequence	NA	coding protein	psRNATarget
AK111996.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||* targets:663   UUCCCGAGCUGCACCAAGCCC   683 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-034-A12, full insert sequence	NA	coding protein	psRNATarget
AK111587.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||* targets:611   UUCCCGAGCUGCACCAAGCCC   631 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013091C01, full insert sequence	NA	coding protein	psRNATarget
AK111504.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||* targets:695   UUCCCGAGCUGCACCAAGCCC   715 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013001B21, full insert sequence	NA	coding protein	psRNATarget
XM_015780805.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||* targets:662   UUCCCGAGCUGCACCAAGCCC   682 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein argonaute 1B (LOC9270411), transcript variant X1, mRNA	protein argonaute 1B(LOC9270411)	coding protein	psRNATarget
XM_015780806.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   ||||||||||||||||||||* targets:702   UUCCCGAGCUGCACCAAGCCC   722 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein argonaute 1B (LOC9270411), transcript variant X2, mRNA	protein argonaute 1B(LOC9270411)	coding protein	psRNATarget
XM_015786610.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   *||||*||||||||||||||| targets:576   AUCCCCAGCUGCACCAAGCCU   596 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281207 (LOC107281207), mRNA	uncharacterized LOC107281207(LOC107281207)	coding protein	psRNATarget
CT832354.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   *||||*||||||||||||||* targets:328   AUCCCCAGCUGCACCAAGCCC   348 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN086B02, full insert sequence	NA	coding protein	psRNATarget
AK071235.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   *||||*||||||||||||||* targets:329   AUCCCCAGCUGCACCAAGCCC   349 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023086P13, full insert sequence	NA	coding protein	psRNATarget
XM_015790225.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   *||||*||||||||||||||* targets:667   AUCCCCAGCUGCACCAAGCCC   687 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344362 (LOC4344362), transcript variant X2, mRNA	uncharacterized LOC4344362(LOC4344362)	coding protein	psRNATarget
XM_015790224.1	ncRNA:21   AAGGGCUCGACGUGGUUCGGA   1   *||||*||||||||||||||* targets:670   AUCCCCAGCUGCACCAAGCCC   690 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344362 (LOC4344362), transcript variant X1, mRNA	uncharacterized LOC4344362(LOC4344362)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).