| ncRNA ID | osa-miR394 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr2:27148154-27148263 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 14 - UUGGCAUUCUGUCCACCUCC - 33 |
| Stem-loop(if miRNA) |
UA - G - U C -UU AUCCUCA CA CUG A AGUUCU UUGGCA U UGUCCACCUCC GUCGA GAGA G ||| | |||||| |||||| | ||||||||||| ||||| |||| GAU U UCGAGG AACCGU A ACGGGUGGAGG UAGUU CUCU A -G G G U C U UUC GUCUAUA AA |
| Stem-loop sequence | UACUGAGAGUUCUUUGGCAUUCUGUCCACCUCCUUGUCGAAUCCUCAGAGACAGAAAUCUCAUAUCUGUUGAUCUUGGAGGUGGGCAUACUGCCAAUGGAGCUGUGUAGG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK241547.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J065176G22, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015766754.1 |
|
0.0 | PREDICTED: Oryza sativa Japonica Group F-box only protein 6 (LOC4327256), mRNA | F-box only protein 6(LOC4327256) | coding protein | psRNATarget | |||||||||
| AK068666.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013163M14, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015782153.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group RNA polymerase sigma factor sigC (LOC4339778), mRNA | RNA polymerase sigma factor sigC(LOC4339778) | coding protein | psRNATarget |
| 1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |