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BaseInfo

ncRNA ID osa-miR814b
Species Oryza sativa
Class miRNA
Genome position Chr2:26341211-26341284 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 12 - CACUUCAUAGUACAACGAAUCU - 33
Stem-loop(if miRNA)                 C                GGA
ACCGGACGAGACACUU AUAGUACAACGAAUCU   C
|||||||||||||||| ||||||||||||||||
UGGUCUGCUCUGUGAA UAUCAUGUUGCUUAGA   A
                A                AGU
Stem-loop sequence ACCGGACGAGACACUUCAUAGUACAACGAAUCUGGACAUGAAGAUUCGUUGUACUAUAAAGUGUCUCGUCUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK241651.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  ||||||*|||||||||||||||
targets:1021   AGAUUCAUUGUACUAUGAAGUG   1042

1.0 Oryza sativa Japonica Group cDNA, clone: J065191A02, full insert sequence NA coding protein psRNATarget
HI404435.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  =|||||||||||||||*|||||
targets:51   GGAUUCGUUGUACUAUAAAGUG   72

1.5 Sequence 2560 from Patent EP2074227 NA coding protein psRNATarget
JB164896.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  =|||||||||||||||*|||||
targets:51   GGAUUCGUUGUACUAUAAAGUG   72

1.5 Sequence 2560 from Patent EP2559767 NA coding protein psRNATarget
LQ236565.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  =|||||||||||||||*|||||
targets:51   GGAUUCGUUGUACUAUAAAGUG   72

1.5 Sequence 2560 from Patent EP2985353 NA coding protein psRNATarget
LQ235935.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  |*||||||||||||||*|||||
targets:51   AUAUUCGUUGUACUAUAAAGUG   72

1.5 Sequence 1930 from Patent EP2985353 NA coding protein psRNATarget
JB164266.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  |*||||||||||||||*|||||
targets:51   AUAUUCGUUGUACUAUAAAGUG   72

1.5 Sequence 1930 from Patent EP2559767 NA coding protein psRNATarget
HI403805.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  |*||||||||||||||*|||||
targets:51   AUAUUCGUUGUACUAUAAAGUG   72

1.5 Sequence 1930 from Patent EP2074227 NA coding protein psRNATarget
LQ236232.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  |*||||||||||||||*|||||
targets:89   AAAUUCGUUGUACUAUAAAGUG   110

1.5 Sequence 2227 from Patent EP2985353 NA coding protein psRNATarget
HI404102.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  |*||||||||||||||*|||||
targets:89   AAAUUCGUUGUACUAUAAAGUG   110

1.5 Sequence 2227 from Patent EP2074227 NA coding protein psRNATarget
JB164563.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  |*||||||||||||||*|||||
targets:89   AAAUUCGUUGUACUAUAAAGUG   110

1.5 Sequence 2227 from Patent EP2559767 NA coding protein psRNATarget
HI403973.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  ||||||*||||||||||||*||
targets:89   AGAUUCAUUGUACUAUGAAAUG   110

2.5 Sequence 2098 from Patent EP2074227 NA coding protein psRNATarget
LQ236103.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  ||||||*||||||||||||*||
targets:89   AGAUUCAUUGUACUAUGAAAUG   110

2.5 Sequence 2098 from Patent EP2985353 NA coding protein psRNATarget
JB164434.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  ||||||*||||||||||||*||
targets:89   AGAUUCAUUGUACUAUGAAAUG   110

2.5 Sequence 2098 from Patent EP2559767 NA coding protein psRNATarget
AK288458.1
ncRNA:22   UCUAAGCAACAUGAUACUUCAC   1
  |*|||||||||||||||||*||
targets:391   AAAUUCGUUGUACUAUGAAAUG   412

1.5 Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence NA coding protein psRNATarget
JB164224.1
ncRNA:19   AAGCAACAUGAUACUUCAC   1
  ||||||||||||||||||*
targets:1   UUCGUUGUACUAUGAAGUA   19

1.0 Sequence 1888 from Patent EP2559767 NA coding protein psRNATarget
HI403763.1
ncRNA:19   AAGCAACAUGAUACUUCAC   1
  ||||||||||||||||||*
targets:1   UUCGUUGUACUAUGAAGUA   19

1.0 Sequence 1888 from Patent EP2074227 NA coding protein psRNATarget
LQ235893.1
ncRNA:19   AAGCAACAUGAUACUUCAC   1
  ||||||||||||||||||*
targets:1   UUCGUUGUACUAUGAAGUA   19

1.0 Sequence 1888 from Patent EP2985353 NA coding protein psRNATarget

Reference

1 PMID:16959252
"Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development";
Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH;
FEBS Lett. 580:5111-5116(2006).