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BaseInfo

ncRNA ID osa-miR166d-5p
Species Oryza sativa
Class miRNA
Genome position Chr2:26130059-26130183 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 21 - GGAAUGUUGUCUGGCUCGAGG - 41
Stem-loop(if miRNA) GA      UUC    U          UU      CU      G  --------U    AAACCUCUGA
  AGCUUU   ACUU GAGGGGAAUG  GUCUGG  CGAGGU CA         GGAG          U
  ||||||   |||| ||||||||||  ||||||  |||||| ||         ||||
  UCGAAA   UGAA CUCCCCUUAC  CGGACC  GCUCUA GU         CUAG          C
CC      ---    -          UU      AG      -  CAGAGAUGU    UUUGGACUAG
Stem-loop sequence GAAGCUUUUUCACUUUGAGGGGAAUGUUGUCUGGCUCGAGGUGCAUGGAGAAACCUCUGAUCGAUCAGGUUUGAUCUGUAGAGACUGAUCUCGGACCAGGCUUCAUUCCCCUCAAGUAAAGCUCC

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).