ncRNA ID | osa-miR166d-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:26130059-26130183 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 21 - GGAAUGUUGUCUGGCUCGAGG - 41 |
Stem-loop(if miRNA) |
GA      UUC    U          UU      CU      G  --------U    AAACCUCUGA   AGCUUU   ACUU GAGGGGAAUG  GUCUGG  CGAGGU CA         GGAG          U   ||||||   |||| ||||||||||  ||||||  |||||| ||         ||||   UCGAAA   UGAA CUCCCCUUAC  CGGACC  GCUCUA GU         CUAG          C CC      ---    -          UU      AG      -  CAGAGAUGU    UUUGGACUAG |
Stem-loop sequence | GAAGCUUUUUCACUUUGAGGGGAAUGUUGUCUGGCUCGAGGUGCAUGGAGAAACCUCUGAUCGAUCAGGUUUGAUCUGUAGAGACUGAUCUCGGACCAGGCUUCAUUCCCCUCAAGUAAAGCUCC |
1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |