| ncRNA ID | osa-miR827 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr2:23901168-23901284 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 1 - UUAGAUGACCAUCAGCAAACA - 21 |
| Stem-loop(if miRNA) |
-U C C AUG U -AUUG AAUAAUUGA GC UUUGUUG UGGUCAUCUAGCUAC CGUGC CC GGAG GAG CGAU A ||||||| ||||||||||||||| ||||| || |||| ||| |||| AAACGAC ACCAGUAGAUUGGUG GCACG GG UCUC UUC GCUG G AC U C --- U GGUUA --------G AC |
| Stem-loop sequence | UUUUGUUGCUGGUCAUCUAGCUACCCGUGCAUGCCUGGAGAUUGGAGAAUAAUUGACGAUGCAGCAGUCGGCUUAUUGGCUCUUGGGCACGCGUGGUUAGAUGACCAUCAGCAAACA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK066068.1 |
|
1.5 | Oryza sativa Japonica Group cDNA clone:J013056J05, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015778104.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group SPX domain-containing membrane protein OsI_17046 (LOC4336724), transcript variant X3, mRNA | SPX domain-containing membrane protein OsI_17046(LOC4336724) | coding protein | psRNATarget | |||||||||
| XM_015778102.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group SPX domain-containing membrane protein OsI_17046 (LOC4336724), transcript variant X1, mRNA | SPX domain-containing membrane protein OsI_17046(LOC4336724) | coding protein | psRNATarget | |||||||||
| XM_015778103.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group SPX domain-containing membrane protein OsI_17046 (LOC4336724), transcript variant X2, mRNA | SPX domain-containing membrane protein OsI_17046(LOC4336724) | coding protein | psRNATarget |
| 1 | PMID:19055717
"Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"; Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M; BMC Plant Biol. 8:123(2008). |
| 2 | PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009). |