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BaseInfo

ncRNA ID	osa-miR162a
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:23605799-23605969 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	143 - UCGAUAAACCUCUGCAUCCAG - 163
Stem-loop(if miRNA)	UGC    GC    U            CC     U  C    ----   G   AUCCAGGAGCGGCGAAUUUCUUUGAGAGGG GGUGA   CUGG  GCAG GGUUUAUCGAUC  UUCCC GC UUGU    GGC CUG                              U |||||   ||||  |||| ||||||||||||  ||||| || ||||    ||| ||| CCGCU   GACC  CGUC CCAAAUAGCUAG  AAGGG CG AACA    CCG CGU                              G      CUU    UA    U            CU     -  C    GCAA   A   UGUUCCUGGUUUUCCUUCUUUUUUUUUCUU
Stem-loop sequence	GGUGAUGCCUGGGCGCAGUGGUUUAUCGAUCCCUUCCCUGCCUUGUGGCGCUGAUCCAGGAGCGGCGAAUUUCUUUGAGAGGGUGUUCUUUUUUUUUCUUCCUUUUGGUCCUUGUUGCAGCCAACGACAACGCGGGAAUCGAUCGAUAAACCUCUGCAUCCAGUUCUCGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015775698.1	ncRNA:21   GACCUACGUCUCCAAA-UAGCU   1   ||||||||||||||||-||||| targets:3508   CUGGAUGCAGAGGUUUUAUCGA   3529 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 1 (LOC4331440), transcript variant X2, mRNA	endoribonuclease Dicer homolog 1(LOC4331440)	coding protein	psRNATarget
XM_015775697.1	ncRNA:21   GACCUACGUCUCCAAA-UAGCU   1   ||||||||||||||||-||||| targets:3511   CUGGAUGCAGAGGUUUUAUCGA   3532 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 1 (LOC4331440), transcript variant X1, mRNA	endoribonuclease Dicer homolog 1(LOC4331440)	coding protein	psRNATarget
AK060192.1	ncRNA:21   GACCUAC---GUCUCCAAAUAGCU   1   =*|||||---|||||||||||||| targets:533   UAGGAUGUUACAGAGGUUUAUCGA   556 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-001-E06, full insert sequence	NA	coding protein	psRNATarget
AB288048.1	ncRNA:21   GACCUAC---GUCUCCAAAUAGCU   1   =*|||||---|||||||||||||| targets:1004   UAGGAUGUUACAGAGGUUUAUCGA   1027 Target Full Sequence	3.0	Oryza sativa Japonica Group OsDrAp2 mRNA for repressor protein, complete cds	NA	coding protein	psRNATarget
AK068320.1	ncRNA:21   GACCUAC---GUCUCCAAAUAGCU   1   =*|||||---|||||||||||||| targets:1118   UAGGAUGUUACAGAGGUUUAUCGA   1141 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013150F08, full insert sequence	NA	coding protein	psRNATarget
XM_015783826.1	ncRNA:21   GACCUAC---GUCUCCAAAUAGCU   1   =*|||||---|||||||||||||| targets:1311   UAGGAUGUUACAGAGGUUUAUCGA   1334 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group dr1-associated corepressor (LOC4339189), mRNA	dr1-associated corepressor(LOC4339189)	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).