Search result

BaseInfo

ncRNA ID	osa-miR5493
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:22898044-22898300 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	227 - AGCCGGGCUCGGUCGCGCGUG - 247
Stem-loop(if miRNA)	C  AG      UC     C    -U    A    ------------------------CA   C ----   A -  UUCCCUGAGACAAAAACAGAGAAGGAAGAGGCCCAUGUAAGAUGGGCUUUCAAGUCAGCUCAAGCAC  AG  GCGGGC  CGUGC GGCC  GCCC GCUG                          GAU U    CGG U GU                                                                   C  ||  ||||||  ||||| ||||  |||| ||||                          ||| |    ||| | ||                                                                   C  UC  UGUCCG  GCGCG CUGG  CGGG CGAC                          UUC G    GAA C GC                                                                   A C  AU      -U     -    CU    C    CACCUCUACCACCCUUCGCGCAUAAA   - ACCA   - C  AGCAAGCCGUUCGCCAUACCAUGAUUAGCUCCCUUAUCACGAACAUCUCCUGUAGCCAUCACUCUUC
Stem-loop sequence	CAGAGGCGGGCUCCGUGCCGGCCUGCCCAGCUGCAGAUCUCGGAUGUUUCCCUGAGACAAAAACAGAGAAGGAAGAGGCCCAUGUAAGAUGGGCUUUCAAGUCAGCUCAAGCACCCACUUCUCACUACCGAUGUCCUCUACAAGCACUAUUCCCUCGAUUAGUACCAUACCGCUUGCCGAACGACGCCAAGACCAGCUUAAAUACGCGCUUCCCACCAUCUCCACCAGCCGGGCUCGGUCGCGCGUGCCUGUUACUC

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).