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BaseInfo

ncRNA ID osa-miR5514
Species Oryza sativa
Class miRNA
Genome position Chr2:22840161-22840264 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UCCCAGAGCUUUGGCCGUCGC - 31
Stem-loop(if miRNA) -   GA   ---CU         UUU    -      -C      UCUGCCA  A
 UUG  CAG     UCCCAGAGC   GGCC GUCGCU  CGGUCU       UG C
 |||  |||     |||||||||   |||| ||||||  ||||||       ||
 GAC  GUU     AGGGUCUUG   CCGG CAGCGG  GCCAGG       AC A
A   AA   CAAGU         -UU    U      CC      -UUUCUA  U
Stem-loop sequence UUGGACAGCUUCCCAGAGCUUUGGCCGUCGCUCCGGUCUUCUGCCAUGACAUCAAUCUUUGGACCGCCGGCGACUGGCCUUGUUCUGGGAUGAACUUGAACAGA

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).