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BaseInfo

ncRNA ID ath-miRf10004-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - AAACGACGUCGUUGGUGAUU - NA
Stem-loop(if miRNA)    GUU    U    A               A  C
GGA   AAUC UCAA CGACGUCGUUUUCAG AG U
|||   |||| |||| ||||||||||||||| ||
UCU   UUAG GGUU GCUGCAGCAAAAGUU UC G
   AUU    U    -               A  G
Stem-loop sequence GGAGUUAAUCUUCAAACGACGUCGUUUUCAGAAGCUGGCUAUUGAAAACGACGUCGUUGGUGAUUUUAUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_129774.4
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  **||||||||||||||||||
targets:608   UCUCACCAACGACGUCGUUU   627

1.0 Arabidopsis thaliana hypothetical protein mRNA hypothetical protein(AT2G42110) coding protein psRNATarget
BT030648.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  **||||||||||||||||||
targets:393   UCUCACCAACGACGUCGUUU   412

1.0 Arabidopsis thaliana unknown protein (At2g42110) mRNA, complete cds NA coding protein psRNATarget
BX815018.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:1108   AGUCUCCAACGACGUCGUUU   1127

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS24ZG04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001198411.2
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:165   AGUCUCCAACGACGUCGUUU   184

2.0 Arabidopsis thaliana DNA primase, large subunit family (EMB2813), mRNA DNA primase, large subunit family(EMB2813) coding protein psRNATarget
NM_001198410.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:97   AGUCUCCAACGACGUCGUUU   116

2.0 Arabidopsis thaliana DNA primase, large subunit family (EMB2813), mRNA DNA primase, large subunit family(EMB2813) coding protein psRNATarget
BX814254.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:26   AGUCUCCAACGACGUCGUUU   45

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB64ZE12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX813496.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:36   AGUCUCCAACGACGUCGUUU   55

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB20ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_105400.2
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:36   AGUCUCCAACGACGUCGUUU   55

2.0 Arabidopsis thaliana DNA primase, large subunit family (EMB2813), mRNA DNA primase, large subunit family(EMB2813) coding protein psRNATarget
AK228152.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:56   AGUCUCCAACGACGUCGUUU   75

2.0 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-61-K06 NA coding protein psRNATarget
AY084736.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:49   AGUCUCCAACGACGUCGUUU   68

2.0 Arabidopsis thaliana clone 116252 mRNA, complete sequence NA coding protein psRNATarget
BX816847.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:10   AGUCUCCAACGACGUCGUUU   29

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZA12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT003155.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:30   AGUCUCCAACGACGUCGUUU   49

2.0 Arabidopsis thaliana At1g67320 mRNA, complete cds NA coding protein psRNATarget
BT015505.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  |=||*|||||||||||||||
targets:27   AGUCUCCAACGACGUCGUUU   46

2.0 Arabidopsis thaliana At1g67320 mRNA sequence NA coding protein psRNATarget
NM_114630.4
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ***|||||||||||||||||
targets:972   UCACACCAACGACGUCGUUU   991

2.0 Arabidopsis thaliana TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (TCP14), mRNA TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14(TCP14) coding protein psRNATarget
AY058874.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ***|||||||||||||||||
targets:800   UCACACCAACGACGUCGUUU   819

2.0 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds NA coding protein psRNATarget
BX825015.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ***|||||||||||||||||
targets:723   UCACACCAACGACGUCGUUU   742

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZB12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX824706.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ***|||||||||||||||||
targets:711   UCACACCAACGACGUCGUUU   730

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZE02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY103304.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ***|||||||||||||||||
targets:761   UCACACCAACGACGUCGUUU   780

2.0 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds NA coding protein psRNATarget
NM_148531.3
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ||||**||||||||||||||
targets:109   AAUCUACAACGACGUCGUUU   128

2.0 Arabidopsis thaliana SET domain-containing protein mRNA SET domain-containing protein(AT1G43245) coding protein psRNATarget
NM_001333210.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ||||**||||||||||||||
targets:15   AAUCUACAACGACGUCGUUU   34

2.0 Arabidopsis thaliana SET domain-containing protein mRNA SET domain-containing protein(AT1G43245) coding protein psRNATarget
NM_105875.5
ncRNA:20   UUAGU--GGUUGCUGCAGCAAA   1
  *||||--|||||||||||||||
targets:637   CAUCAUGCCAACGACGUCGUUU   658

2.5 Arabidopsis thaliana MICOS complex subunit, putative (DUF543) mRNA MICOS complex subunit, putative (DUF543)(AT1G72170) coding protein psRNATarget
NM_201860.2
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  *|||*||=||||||||||||
targets:846   CAUCUCCGACGACGUCGUUU   865

2.5 Arabidopsis thaliana B-box type zinc finger protein with CCT domain-containing protein (BBX12), mRNA B-box type zinc finger protein with CCT domain-containing protein(BBX12) coding protein psRNATarget
NM_179880.2
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  *|||*||=||||||||||||
targets:822   CAUCUCCGACGACGUCGUUU   841

2.5 Arabidopsis thaliana B-box type zinc finger protein with CCT domain-containing protein (BBX12), mRNA B-box type zinc finger protein with CCT domain-containing protein(BBX12) coding protein psRNATarget
BT002067.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  *|||*||=||||||||||||
targets:822   CAUCUCCGACGACGUCGUUU   841

2.5 Arabidopsis thaliana putative CONSTANS-like B-box zinc finger protein (At2g33500) mRNA, complete cds NA coding protein psRNATarget
BX821321.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  *|||*||=||||||||||||
targets:792   CAUCUCCGACGACGUCGUUU   811

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL33ZH05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX818986.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  *|||*||=||||||||||||
targets:758   CAUCUCCGACGACGUCGUUU   777

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB34ZG09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX819212.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  *|||*||=||||||||||||
targets:710   CAUCUCCGACGACGUCGUUU   729

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZA02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AB493575.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  *|||*||=||||||||||||
targets:614   CAUCUCCGACGACGUCGUUU   633

2.5 Arabidopsis thaliana At2g33500 mRNA for hypothetical protein, partial cds, clone: RAAt2g33500 NA coding protein psRNATarget
AY128321.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  *|||*||=||||||||||||
targets:41   CAUCUCCGACGACGUCGUUU   60

2.5 Arabidopsis thaliana putative CONSTANS-like B-box zinc finger protein (At2g33500) mRNA, complete cds NA coding protein psRNATarget
NM_105627.3
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ||*||=*|||||||||||||
targets:1138   AAGCAUAAACGACGUCGUUU   1157

3.0 Arabidopsis thaliana Homeodomain-like superfamily protein mRNA Homeodomain-like superfamily protein(AT1G69580) coding protein psRNATarget
NM_001084329.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ||*||=*|||||||||||||
targets:1054   AAGCAUAAACGACGUCGUUU   1073

3.0 Arabidopsis thaliana Homeodomain-like superfamily protein partial mRNA Homeodomain-like superfamily protein(AT1G69580) coding protein psRNATarget
BT029516.1
ncRNA:20   UUAGUGGUUGCUGCAGCAAA   1
  ||*||=*|||||||||||||
targets:855   AAGCAUAAACGACGUCGUUU   874

3.0 Arabidopsis thaliana At1g69580 mRNA, complete cds NA coding protein psRNATarget
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