Search result

BaseInfo

ncRNA ID	osa-miR1861c
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:20716174-20716280 [+]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	23 - CGAUCUUGUAGCAAGAACUGAG - 44
Stem-loop(if miRNA)	-  G G          U   A C  A      AG         A     UC U  CG U UUGCAUAUUC UAG C CG UCUUGU  CAAGAACUG GUAGU  G U  || | |||||||||| ||| | || ||||||  ||||||||| |||||  |  GU G AACGUAUAAG GUC G GC AGAACA  GUUCUUGGC CAUCG  C A G  G A          U   C A  C      CU         G     CU A
Stem-loop sequence	CGGUGUUGCAUAUUCUUAGACCCGAUCUUGUAGCAAGAACUGAGUAGUUCGUUAACUCGCUACGCGGUUCUUGUCACAAGACCGAGCCUGUGAAUAUGCAAAGGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF261272.1	ncRNA:22   GAGUCAAGAACGAUGUUCUAGC   1   =*|=|*|||||||||||||||* targets:379   UGCGGCUCUUGCUACAAGAUCA   400 Target Full Sequence	3.0	Oryza sativa beta-expansin (EXPB4) mRNA, complete cds	NA	coding protein	psRNATarget
AK103929.1	ncRNA:22   GAGUCAAGAACGAUGUUCUAGC   1   =*|=|*|||||||||||||||* targets:429   UGCGGCUCUUGCUACAAGAUCA   450 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-013-D11, full insert sequence	NA	coding protein	psRNATarget
AK105981.1	ncRNA:22   GAGUCAAGAACGAUGUUCUAGC   1   =*|=|*|||||||||||||||* targets:436   UGCGGCUCUUGCUACAAGAUCA   457 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-205-F12, full insert sequence	NA	coding protein	psRNATarget
AK060096.1	ncRNA:22   GAGUCAAGAACGAUGUUCUAGC   1   =*|=|*|||||||||||||||* targets:435   UGCGGCUCUUGCUACAAGAUCA   456 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-307-G02, full insert sequence	NA	coding protein	psRNATarget
AK101357.1	ncRNA:22   GAGUCAAGAACGAUGUUCUAGC   1   =*|=|*|||||||||||||||* targets:617   UGCGGCUCUUGCUACAAGAUCA   638 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033035B15, full insert sequence	NA	coding protein	psRNATarget
XM_015759506.1	ncRNA:22   GAGUCAAGAACGAUGUUCUAGC   1   =*|=|*|||||||||||||||* targets:611   UGCGGCUCUUGCUACAAGAUCA   632 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group expansin-B4 (LOC4349350), mRNA	expansin-B4(LOC4349350)	coding protein	psRNATarget
AK064012.1	ncRNA:22   GAGUCAAGAACGAUGUUCUAGC   1   =*|=|*|||||||||||||||* targets:435   UGCGGCUCUUGCUACAAGAUCA   456 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-124-H01, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).