| ncRNA ID | osa-miR5495 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr2:20298332-20298595 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - AGAGGUCCGGAUCGAACGUAG - 31 |
| Stem-loop(if miRNA) |
A AACCC C - U --G U - ----AU ACAA UACCGCGUAUUGUCUCUUACAGCCUUAUAGCACAUUCUGCACUCUUGUCUCAUGGGCUGUGCACAUUGU CAU GAGAGGUC GGAUCGAA CG AG AA AGU CAAGAAA GGCAA ACG U ||| |||||||| |||||||| || || || ||| ||||||| ||||| ||| U GUA CUUUCCGG CCUAGUUU GU UC UU UCA GUUCUUU GUGUA CGU U G AAGUU U C U AGA C A AAUUAA ---U GGGACCCUCUUCUUCUAUCACUUUACCGAACGCGUCCGGUUGCUCCAGUGUUACUAGAGGUACCCAUAG |
| Stem-loop sequence | ACAUAACCCGAGAGGUCCGGAUCGAACGUAGGAAUAGUCAAGAAAAUGGCAAACAAACGUACCGCGUAUUGUCUCUUACAGCCUUAUAGCACAUUCUGCACUCUUGUCUCAUGGGCUGUGCACAUUGUUUUGAUACCCAUGGAGAUCAUUGUGACCUCGUUGGCCUGCGCAAGCCAUUUCACUAUCUUCUUCUCCCAGGGUGCUAUGUGAAUUAAUUUCUUGAACUCUUAGACUUUGCUUUGAUCCUGGCCUUUCUUGAAAUGG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EU368707.1 |
|
3.0 | Oryza sativa Indica Group SKIP interacting protein 17 (SIP17) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| XM_015764512.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At1g30440 (LOC9272048), transcript variant X2, mRNA | BTB/POZ domain-containing protein At1g30440(LOC9272048) | coding protein | psRNATarget | |||||||||
| XM_015764511.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At1g30440 (LOC9272048), transcript variant X1, mRNA | BTB/POZ domain-containing protein At1g30440(LOC9272048) | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |