ncRNA ID | osa-miR5544 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:19334838-19335042 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 174 - AGAACACGGAGUAGAAGUUGGU - 195 |
Stem-loop(if miRNA) |
U   UG        -    C    A  UU   A   A   UUAAUUUUCUUACUAACAAAAUCUUACCAUGCUAU -  UUU   - CUCUUAUUCUCAUAUUCUUGUUCUAAUUAUGCAC  UGU  UGACACCA UUUC AUUU GU  UUC UAC CCA                                   A GA   CAG C                                  C  |||  |||||||| |||| |||| ||  ||| ||| |||                                   | ||   ||| |                                  U  ACG  ACUGUGGU GAAG UGAG CA  AAG AUG GGU                                   C AC   GAG U                                  U G   UA        U    A    G  -C   -   A   --------------------------------UUG U  ---   G UCAUAGCUUGUUGUUCUUGUUGGAUACCUAAGUG |
Stem-loop sequence | UUGUUGUGACACCAUUUCCAUUUAGUUUUUCAUACACCAUUAAUUUUCUUACUAACAAAAUCUUACCAUGCUAUAGAUUUCAGCCUCUUAUUCUCAUAUUCUUGUUCUAAUUAUGCACCUUGUGAAUCCAUAGGUUGUUCUUGUUGUUCGAUACUUGGAGCAUCGUUUGGAGUAGAACACGGAGUAGAAGUUGGUGUCAAUGCAG |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |