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BaseInfo

ncRNA ID osa-miR5544
Species Oryza sativa
Class miRNA
Genome position Chr2:19334838-19335042 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 174 - AGAACACGGAGUAGAAGUUGGU - 195
Stem-loop(if miRNA) U   UG        -    C    A  UU   A   A   UUAAUUUUCUUACUAACAAAAUCUUACCAUGCUAU -  UUU   - CUCUUAUUCUCAUAUUCUUGUUCUAAUUAUGCAC
 UGU  UGACACCA UUUC AUUU GU  UUC UAC CCA                                   A GA   CAG C                                  C
 |||  |||||||| |||| |||| ||  ||| ||| |||                                   | ||   ||| |                                  U
 ACG  ACUGUGGU GAAG UGAG CA  AAG AUG GGU                                   C AC   GAG U                                  U
G   UA        U    A    G  -C   -   A   --------------------------------UUG U  ---   G UCAUAGCUUGUUGUUCUUGUUGGAUACCUAAGUG
Stem-loop sequence UUGUUGUGACACCAUUUCCAUUUAGUUUUUCAUACACCAUUAAUUUUCUUACUAACAAAAUCUUACCAUGCUAUAGAUUUCAGCCUCUUAUUCUCAUAUUCUUGUUCUAAUUAUGCACCUUGUGAAUCCAUAGGUUGUUCUUGUUGUUCGAUACUUGGAGCAUCGUUUGGAGUAGAACACGGAGUAGAAGUUGGUGUCAAUGCAG

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).