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BaseInfo

ncRNA ID	osa-miR2873b
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:18974743-18974902 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	134 - UUGGACUUGAGAUUUGGUAUG - 154
Stem-loop(if miRNA)	CC       A             CAA        AG   U           --C                AAC UACAUUC  ACCAAAU UCAAGUUCAAACU   CUUUAUUU  GAG AACAGAAAAGA   AUUUUGGGUGAAUGGU   A |||||||  ||||||| |||||||||||||   ||||||||  ||| |||||||||||   |||||||||||||||| AUGUAAG  UGGUUUA AGUUCAGGUUUGA   GAAGUAAA  CUC UUGUUUUUUCU   UAAGAUCCACUUAUCA   U        UA       G             AUC        CU   U           CUU                CAG
Stem-loop sequence	UACAUUCCCACCAAAUAUCAAGUUCAAACUCAACUUUAUUUAGGAGUAACAGAAAAGACAUUUUGGGUGAAUGGUAACAUGACACUAUUCACCUAGAAUUUCUCUUUUUUGUUUCUCUCAAAUGAAGCUAAGUUUGGACUUGAGAUUUGGUAUGAAUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403798.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   ||||||||||||||||||||| targets:28   CAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	0.0	Sequence 1923 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235928.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   ||||||||||||||||||||| targets:28   CAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	0.0	Sequence 1923 from Patent EP2985353	NA	coding protein	psRNATarget
JB164259.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   ||||||||||||||||||||| targets:28   CAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	0.0	Sequence 1923 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236280.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   ||||=|||||||||||||||| targets:28   CAUAUCAAAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 2275 from Patent EP2985353	NA	coding protein	psRNATarget
HI404150.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   ||||=|||||||||||||||| targets:28   CAUAUCAAAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 2275 from Patent EP2074227	NA	coding protein	psRNATarget
JB164611.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   ||||=|||||||||||||||| targets:28   CAUAUCAAAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 2275 from Patent EP2559767	NA	coding protein	psRNATarget
HI403625.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   |||||||=||||||||||||| targets:28   CAUACCAGAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 1750 from Patent EP2074227	NA	coding protein	psRNATarget
JB164086.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   |||||||=||||||||||||| targets:28   CAUACCAGAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 1750 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235755.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   |||||||=||||||||||||| targets:28   CAUACCAGAUCUCAAGUCCAA   48 Target Full Sequence	1.0	Sequence 1750 from Patent EP2985353	NA	coding protein	psRNATarget
CT832946.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   ||||||||||*|||||||||| targets:810   CAUACCAAAUGUCAAGUCCAA   830 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240N02, full insert sequence	NA	coding protein	psRNATarget
AK065400.1	ncRNA:21   GUAUGGUUUAGAGUUCAGGUU   1   ||||||||||*|||||||||| targets:866   CAUACCAAAUGUCAAGUCCAA   886 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013020I02, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011).