ncRNA ID | osa-miR2879 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:18895908-18896208 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 10 - GCCAGAUGUGUUAAAAUAAUGACC - 33 |
Stem-loop(if miRNA) |
UGCCCAG   CG  C           C         C  A    C        --       UA   A  A     G   A     -   A  UGU  A    U  CAA     --  ACAAAAGAUUAUACUGACACUAAAUUCAUCUGAUCUAGUA        ACG  CU UGGUCAUUAUU UAACAUAUC GG UCAA UGGAGAGA  GAAUUUU  GAA GG UGUUU UGC CUUGU UCA CC   UU ACAA CA   UCAGA  UC                                        C        |||  || ||||||||||| ||||||||| || |||| ||||||||  |||||||  ||| || ||||| ||| ||||| ||| ||   || |||| ||   |||||  ||        UGU  GA ACCAGUAAUAA AUUGUGUAG CC AGUU ACCUCUCU  UUUAAAA  UUU CC GCGAA AUG GAGCA GGU GG   AA UGUU GU   GAUUU  AC                                        U -------   AU  U           A         A  G    A        AA       UA   A  -     A   G     C   A  --U  C    U  --A     UU  UAGUUCAUCAGUUUUGUUCUCCGUAAUACGCCUUUUUAUU |
Stem-loop sequence | UGCCCAGACGCGCUCUGGUCAUUAUUCUAACAUAUCCGGAUCAACUGGAGAGAGAAUUUUUAGAAAGGAUGUUUGUGCACUUGUUCAACCUGUUUAACAAUCACAAUCAGAUCACAAAAGAUUAUACUGACACUAAAUUCAUCUGAUCUAGUACUUUAUUUUUCCGCAUAAUGCCUCUUGUUUUGACUACUUGAUCAUUUUUAGAUGUUUGUCAAUGGAUGGCACGAGGGUAAAAGCGCCAUUUAUAAAAUUUAAUCUCUCCAAUUGAGCCAGAUGUGUUAAAAUAAUGACCAUAGUAUGU |
1 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |