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BaseInfo

ncRNA ID osa-miR2879
Species Oryza sativa
Class miRNA
Genome position Chr2:18895908-18896208 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 10 - GCCAGAUGUGUUAAAAUAAUGACC - 33
Stem-loop(if miRNA) UGCCCAG   CG  C           C         C  A    C        --       UA   A  A     G   A     -   A  UGU  A    U  CAA     --  ACAAAAGAUUAUACUGACACUAAAUUCAUCUGAUCUAGUA
       ACG  CU UGGUCAUUAUU UAACAUAUC GG UCAA UGGAGAGA  GAAUUUU  GAA GG UGUUU UGC CUUGU UCA CC   UU ACAA CA   UCAGA  UC                                        C
       |||  || ||||||||||| ||||||||| || |||| ||||||||  |||||||  ||| || ||||| ||| ||||| ||| ||   || |||| ||   |||||  ||
       UGU  GA ACCAGUAAUAA AUUGUGUAG CC AGUU ACCUCUCU  UUUAAAA  UUU CC GCGAA AUG GAGCA GGU GG   AA UGUU GU   GAUUU  AC                                        U
-------   AU  U           A         A  G    A        AA       UA   A  -     A   G     C   A  --U  C    U  --A     UU  UAGUUCAUCAGUUUUGUUCUCCGUAAUACGCCUUUUUAUU
Stem-loop sequence UGCCCAGACGCGCUCUGGUCAUUAUUCUAACAUAUCCGGAUCAACUGGAGAGAGAAUUUUUAGAAAGGAUGUUUGUGCACUUGUUCAACCUGUUUAACAAUCACAAUCAGAUCACAAAAGAUUAUACUGACACUAAAUUCAUCUGAUCUAGUACUUUAUUUUUCCGCAUAAUGCCUCUUGUUUUGACUACUUGAUCAUUUUUAGAUGUUUGUCAAUGGAUGGCACGAGGGUAAAAGCGCCAUUUAUAAAAUUUAAUCUCUCCAAUUGAGCCAGAUGUGUUAAAAUAAUGACCAUAGUAUGU

Reference

1 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).