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BaseInfo

ncRNA ID	osa-miR169f.1
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:18558299-18558512 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	163 - UAGCCAAGGAUGACUUGCCUA - 183
Stem-loop(if miRNA)	G             -           A     -          U   U    U     CU   U   U    UUAUACGCUGCUCAUCUGCAUUUUGAUUAUCCCCUGA  GGCCUUCCAUGAG GACAAGAGCUG UUCGG UAGCCAAGGA GAC UGCC AAUGC  AUG GCA GUGU                                     U  ||||||||||||| ||||||||||| ||||| |||||||||| ||| |||| |||||  ||| ||| ||||                                     C  UCGGAAGGUGCUC CUGUUCUCGGC AGGCU AUCGGUUCCU CUG ACGG AUAUA  UAC AUA CUCA                                     A G             U           G     U          U   U    -     --   -   -    UGUCUCAUGAUGUGUGUGUAUAUUAACUGCUGUCCUG
Stem-loop sequence	GGGCCUUCCAUGAGGACAAGAGCUGAUUCGGUAGCCAAGGAUGACUUGCCUAAUGCCUAUGUGCAUGUGUUUAUACGCUGCUCAUCUGCAUUUUGAUUAUCCCCUGAUCAGUCCUGUCGUCAAUUAUAUGUGUGUGUAGUACUCUGUACUCAUACAUAUAUAGGCAUGUCUUCCUUGGCUAUUCGGAGCGGCUCUUGUCUCUCGUGGAAGGCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767949.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:964   UAGGCAAUUCAUCCUUGGCUU   984 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
AK318574.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:989   UAGGCAAUUCAUCCUUGGCUU   1009 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence	NA	coding protein	psRNATarget
XM_015767947.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:1217   UAGGCAAUUCAUCCUUGGCUU   1237 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015767946.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |||||||*||||||||||||* targets:1341   UAGGCAAUUCAUCCUUGGCUU   1361 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC9270863), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC9270863)	coding protein	psRNATarget
XM_015790064.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||= targets:1189   GUGGCAAUUCAUCCUUGGCUG   1209 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-2 (LOC4342440), mRNA	nuclear transcription factor Y subunit A-2(LOC4342440)	coding protein	psRNATarget
AB288029.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:650   AUGGCAAAUCAUCCUUGGCUU   670 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2C mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
JC611919.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:807   GUGGCAAUUCAUCCUUGGCUU   827 Target Full Sequence	2.0	Sequence 81 from Patent WO2014106838	NA	coding protein	psRNATarget
Y10905.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:801   AUGGCAAAUCAUCCUUGGCUU   821 Target Full Sequence	2.0	Oryza sativa mRNA RAPB protein	NA	coding protein	psRNATarget
EU847006.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:798   AUGGCAAAUCAUCCUUGGCUU   818 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS364E08 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
CT832705.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:822   AUGGCAAAUCAUCCUUGGCUU   842 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105G23, full insert sequence	NA	coding protein	psRNATarget
AB288031.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1020   GUGGCAAUUCAUCCUUGGCUU   1040 Target Full Sequence	2.0	Oryza sativa Japonica Group OsHAP2E mRNA for HAP2 subunit of HAP complex, complete cds	NA	coding protein	psRNATarget
XM_015776336.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:870   AUGGCAAAUCAUCCUUGGCUU   890 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-7 (LOC4331796), mRNA	nuclear transcription factor Y subunit A-7(LOC4331796)	coding protein	psRNATarget
AK069348.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:990   AUGGCAAAUCAUCCUUGGCUU   1010 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023014B08, full insert sequence	NA	coding protein	psRNATarget
AK101684.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1166   GUGGCAAUUCAUCCUUGGCUU   1186 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence	NA	coding protein	psRNATarget
CT834459.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1237   GUGGCAAUUCAUCCUUGGCUU   1257 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA222O23, full insert sequence	NA	coding protein	psRNATarget
XM_015791076.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1198   GUGGCAAUUCAUCCUUGGCUU   1218 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
EU847011.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1116   GUGGCAAUUCAUCCUUGGCUU   1136 Target Full Sequence	2.0	Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
XM_015791073.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1329   GUGGCAAUUCAUCCUUGGCUU   1349 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK062135.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1244   GUGGCAAUUCAUCCUUGGCUU   1264 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015791075.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1353   GUGGCAAUUCAUCCUUGGCUU   1373 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget
AK071595.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1280   GUGGCAAUUCAUCCUUGGCUU   1300 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023106F21, full insert sequence	NA	coding protein	psRNATarget
XM_015776494.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1286   GUGGCAAUUCAUCCUUGGCUU   1306 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4333094), mRNA	nuclear transcription factor Y subunit A-4(LOC4333094)	coding protein	psRNATarget
XM_015791074.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:2327   GUGGCAAUUCAUCCUUGGCUU   2347 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group nuclear transcription factor Y subunit A-4 (LOC4343866), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4(LOC4343866)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).