| ncRNA ID | osa-miR5147 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr2:17049859-17050224 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 8 - ACAACUCUUGUGGAUGGAGGG - 28 |
| Stem-loop(if miRNA) |
CUAG G A A UUU A --GA - AACACUAACU CUGAUCCAUUUAUUCAUCUAUAUGGAUUCAUACGCAGUGUCGUUUCGUUUUUCCCGCAUAUCGCGCAUACGCAACCAACAGCCCCGCCCUCGUGCACUGGUGCCGCAUGCAU UACUC CUCCAUCCACGAGAGUUGU C UAUAAC UUUC CAGU CCA AGGAG CCU G ||||| ||||||||||||||||||| | |||||| |||| |||| ||| ||||| ||| C AUGAG GAGGUAGGUGUUCUCAACA G GUAUUG AAAG GUCA GGU UUCUC UUG A -GUA G C C --U A AAUA G -------AAC CAUAAAACAAACACGGAGCUUCGUCAUUAGCAUACCGACGCCUACCUAAUUAAACUAUUGCGCCGGGCUCGUCGGUUGGUCAACUCGUACGUGUACGUUAACCGUUCCGUUG |
| Stem-loop sequence | CUAGUACUCGCUCCAUCCACGAGAGUUGUACAUAUAACUUUUUUCACAGUGACCAAGGAGAACACUAACUCCUCUGAUCCAUUUAUUCAUCUAUAUGGAUUCAUACGCAGUGUCGUUUCGUUUUUCCCGCAUAUCGCGCAUACGCAACCAACAGCCCCGCCCUCGUGCACUGGUGCCGCAUGCAUGCAGUUGCCUUGCCAAUUGCAUGUGCAUGCUCAACUGGUUGGCUGCUCGGGCCGCGUUAUCAAAUUAAUCCAUCCGCAGCCAUACGAUUACUGCUUCGAGGCACAAACAAAAUACGUUCAACUCUUGUGGAUAAACUGAGAAAUGUUAUGCGCACAACUCUUGUGGAUGGAGGGAGUAAUG |
| 1 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |
| 2 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |