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BaseInfo

ncRNA ID	osa-miR5179
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:12450910-12451133 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUUUGCUCAAGACCGCGCAAC - 31
Stem-loop(if miRNA)	----      -    U     -         G  -U     UGA  C            C         AUGUUCAUCCA     CCUGUUGAUCUUCAGAUAAGAGAAAAGCU UUGAGA    GGCGUU UUGC CAAGA CCGCGCAAC AU  CCAUA   CA CGCAUCGUUGUC AUGCCUAUC           GAGCC                             C ||||||    |||||| |||| ||||| ||||||||| ||  |||||   || |||||||||||| |||||||||           ||||| AGCUCU    UUGCAA AACG GUUCU GGCGUGUUG UA  GGUAU   GU GCGUAGCGGCAG UAUGGAUAG           AACUG                             A       AGUU      U    C     U         G  CC     -CG  C            C         ----------G     UACUAGUUAUUUGUUCGGAAGAAAUUAAA
Stem-loop sequence	UUGAGAGGCGUUUUGCUCAAGACCGCGCAACGAUUCCAUAUGACACCGCAUCGUUGUCCAUGCCUAUCAUGUUCAUCCAGAGCCCCUGUUGAUCUUCAGAUAAGAGAAAAGCUCAAAAUUAAAGAAGGCUUGUUUAUUGAUCAUGUCAAGGAUAGGUAUCGACGGCGAUGCGCUGGCUAUGGCCAUGGUUGUGCGGUUCUUGCGCAAUAACGUUUUGAUCUCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF077760.1	ncRNA:21   CAACGCGCCAGAACUCGUUUU   1   |*||||||||||||||||||| targets:425   GCUGCGCGGUCUUGAGCAAAA   445 Target Full Sequence	0.0	Oryza sativa MADS box protein (MADS16) mRNA, complete cds	NA	coding protein	psRNATarget
AB003323.1	ncRNA:21   CAACGCGCCAGAACUCGUUUU   1   |*||||||||||||||||||| targets:461   GCUGCGCGGUCUUGAGCAAAA   481 Target Full Sequence	0.0	Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:E20969	NA	coding protein	psRNATarget
AK069317.1	ncRNA:21   CAACGCGCCAGAACUCGUUUU   1   |*||||||||||||||||||| targets:575   GCUGCGCGGUCUUGAGCAAAA   595 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023014M24, full insert sequence	NA	coding protein	psRNATarget
XM_015786175.1	ncRNA:21   CAACGCGCCAGAACUCGUUUU   1   |*||||||||||||||||||| targets:569   GCUGCGCGGUCUUGAGCAAAA   589 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 16 (LOC4342047), mRNA	MADS-box transcription factor 16(LOC4342047)	coding protein	psRNATarget
AK289248.1	ncRNA:21   CAACGCGCCAGAACUCGUUUU   1   |*||||||||||||||||||| targets:474   GCUGCGCGGUCUUGAGCAAAA   494 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J100079D02, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).