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BaseInfo

ncRNA ID	osa-miR5541
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:10238953-10239146 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	164 - UCAAGUGGUGUACUCUAAAGA - 184
Stem-loop(if miRNA)	-           C                        AA      UAAUUUAA    C        C    CCU                   CACCCUAA  GUCCAAUGAGU AAGUGGUGUACUCUAAAGAAAAAA  UCUAAU        CCAC UAAAAUAG UUUU   UUUCCUUUUUGGGAUUUAU        A  ||||||||||| ||||||||||||||||||||||||  ||||||        |||| |||||||| ||||   |||||||||||||||||||  CAGGUUACUCA UUCACCACAUGAGAUUUCUUUUUU  AGAUUA        GGUG AUUUUAUC AAAA   AAAGGAAAAACCCUAAAUA        C U           A                        -C      ----UAUG    C        -    ---                   CAUAACAU
Stem-loop sequence	GUCCAAUGAGUCAAGUGGUGUACUCUAAAGAAAAAAAAUCUAAUUAAUUUAACCACCUAAAAUAGCUUUUCCUUUUCCUUUUUGGGAUUUAUCACCCUAAACUACAAUACAUAAAUCCCAAAAAGGAAAAAAACUAUUUUACGUGGGUAUAUUAGACUUUUUUCUUUAGAGUACACCACUUAACUCAUUGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242873.1	ncRNA:21   AGAAAUCUCAUGUGGUGAACU   1   |=||||*||||*||||||||| targets:1975   UUUUUAUAGUAAACCACUUGA   1995 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090077A14, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).