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BaseInfo

ncRNA ID	osa-miR1863a
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:8521746-8522119 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	341 - AGCUCUGAUACCAUGUUAGAUUAG - 364
Stem-loop(if miRNA)	--C      U                  C             A UU  UCUUGUUCCCUCAAUCCCGUUUGUCUCCAUCCACAACCACACGAGUGCAAAGCCUCACAUUCAUGUCAACAACAACUCUCAUGUCAUUAGCAAAUCUAGUGUCUAGCAUCAACACCUAGGUAGCACUUAUUGGUUAAAAA    CAUAUC CUAGUCUAAUAUGGUAUC GAGCUUAUUGGUU G  GC                                                                                                                                            G    |||||| |||||||||||||||||| ||||||||||||| |  ||    GUAUAG GAUUAGAUUGUACCAUAG CUCGAAUAACCAG A  GG                                                                                                                                            G UCC      U                  U             A --  GGUAUGACGUUGAAACGAUUGGUUAUAAAUCACUGUUUGGAAGGUAGUGUUGUAAUAAUAACGUUCGUGGUUUCGCGUGUAUAACAGUUCGUAGGUUUGCACAUCACCUGAUCACCAACGAGUAAAAAGGAUCGUUUACG
Stem-loop sequence	CCAUAUCUCUAGUCUAAUAUGGUAUCCGAGCUUAUUGGUUAGUUGCUCUUGUUCCCUCAAUCCCGUUUGUCUCCAUCCACAACCACACGAGUGCAAAGCCUCACAUUCAUGUCAACAACAACUCUCAUGUCAUUAGCAAAUCUAGUGUCUAGCAUCAACACCUAGGUAGCACUUAUUGGUUAAAAAGGGCAUUUGCUAGGAAAAAUGAGCAACCACUAGUCCACUACACGUUUGGAUGCUUGACAAUAUGUGCGCUUUGGUGCUUGCAAUAAUAAUGUUGUGAUGGAAGGUUUGUCACUAAAUAUUGGUUAGCAAAGUUGCAGUAUGGGGAAGACCAAUAAGCUCUGAUACCAUGUUAGAUUAGUGAUAUGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109834.1	ncRNA:24   GAUUAGAUUGUACCAUAGUCUCGA   1   |||-|||||||||||||||||||* targets:36   CUA-UCUAACAUGGUAUCAGAGCG   58 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-148-D01, full insert sequence	NA	coding protein	psRNATarget
XM_015783355.1	ncRNA:24   GAUUAGAUUGUACCAUAGUCUCGA   1   |||-|||||||||||||||||||* targets:393   CUA-UCUAACAUGGUAUCAGAGCG   415 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4338142 (LOC4338142), mRNA	uncharacterized LOC4338142(LOC4338142)	coding protein	psRNATarget
XM_015786657.1	ncRNA:24   GAU----UAGAUUGUACCAUAGUCUCGA   1   |||----|||*||||||||||||||||* targets:20   CUAUACUAUCCAACAUGGUAUCAGAGCG   47 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340754 (LOC4340754), mRNA	uncharacterized LOC4340754(LOC4340754)	coding protein	psRNATarget
AK070092.1	ncRNA:24   GAU----UAGAUUGUACCAUAGUCUCGA   1   |||----|||*||||||||||||||||* targets:28   CUAUACUAUCCAACAUGGUAUCAGAGCG   55 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023041H09, full insert sequence	NA	coding protein	psRNATarget
JB164608.1	ncRNA:24   GAUUAGA-UUGUACCAUAGUCUCGA   1   =*||*||-||||||||||||||||| targets:8   UGAACCUCAACAUGGUAUCAGAGCU   32 Target Full Sequence	2.0	Sequence 2272 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236277.1	ncRNA:24   GAUUAGA-UUGUACCAUAGUCUCGA   1   =*||*||-||||||||||||||||| targets:8   UGAACCUCAACAUGGUAUCAGAGCU   32 Target Full Sequence	2.0	Sequence 2272 from Patent EP2985353	NA	coding protein	psRNATarget
HI404147.1	ncRNA:24   GAUUAGA-UUGUACCAUAGUCUCGA   1   =*||*||-||||||||||||||||| targets:8   UGAACCUCAACAUGGUAUCAGAGCU   32 Target Full Sequence	2.0	Sequence 2272 from Patent EP2074227	NA	coding protein	psRNATarget
AK121092.1	ncRNA:24   GAUUAGAUUGUACCAUAGUCUCGA   1   |||-||*||||||||||||||||* targets:39   CUA-UCCAACAUGGUAUCAGAGCG   61 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023066P11, full insert sequence	NA	coding protein	psRNATarget
CT831322.1	ncRNA:24   GAUUAG-AUUGUACCAUAGUCUCGA   1   *|=*||-|||||||||||||||||* targets:960   GUGUUCAUAACAUGGUAUCAGAGCA   984 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110O23, full insert sequence	NA	coding protein	psRNATarget
XM_015770419.1	ncRNA:24   GAUUAG-AUUGUACCAUAGUCUCGA   1   *|=*||-|||||||||||||||||* targets:551   GUGUUCAUAACAUGGUAUCAGAGCA   575 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group ubiquitin-like modifier-activating enzyme 5 (LOC4329438), transcript variant X4, mRNA	ubiquitin-like modifier-activating enzyme 5(LOC4329438)	coding protein	psRNATarget
XM_015770418.1	ncRNA:24   GAUUAG-AUUGUACCAUAGUCUCGA   1   *|=*||-|||||||||||||||||* targets:551   GUGUUCAUAACAUGGUAUCAGAGCA   575 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group ubiquitin-like modifier-activating enzyme 5 (LOC4329438), transcript variant X3, mRNA	ubiquitin-like modifier-activating enzyme 5(LOC4329438)	coding protein	psRNATarget
XM_015770415.1	ncRNA:24   GAUUAG-AUUGUACCAUAGUCUCGA   1   *|=*||-|||||||||||||||||* targets:551   GUGUUCAUAACAUGGUAUCAGAGCA   575 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group ubiquitin-like modifier-activating enzyme 5 (LOC4329438), transcript variant X1, mRNA	ubiquitin-like modifier-activating enzyme 5(LOC4329438)	coding protein	psRNATarget
XM_015770417.1	ncRNA:24   GAUUAG-AUUGUACCAUAGUCUCGA   1   *|=*||-|||||||||||||||||* targets:561   GUGUUCAUAACAUGGUAUCAGAGCA   585 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group ubiquitin-like modifier-activating enzyme 5 (LOC4329438), transcript variant X2, mRNA	ubiquitin-like modifier-activating enzyme 5(LOC4329438)	coding protein	psRNATarget
AK065463.1	ncRNA:24   GAUUAGAUUGUACCAUAGUCUCGA   1   **|*|=|=|||||||||||||||* targets:1   GGAUUUUGACAUGGUAUCAGAGCA   24 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013004M04, full insert sequence	NA	coding protein	psRNATarget
XM_015767862.1	ncRNA:24   GAUUAGAUUGUACCAUAGUCUCGA   1   **||*=|||=|||||||||||||* targets:179   GCAACUUAAUAUGGUAUCAGAGCC   202 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group leucine-rich repeat receptor-like protein kinase PXL2 (LOC107277122), mRNA	leucine-rich repeat receptor-like protein kinase PXL2(LOC107277122)	coding protein	psRNATarget
XM_015782966.1	ncRNA:24   GAUUAGA-UUGUACCAUAGUCUCGA   1   **|=*||-|=||||||||||||||| targets:859   ACAGACUCAGCAUGGUAUCAGAGCU   883 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group type I inositol polyphosphate 5-phosphatase 8-like (LOC107276788), transcript variant X1, mRNA	type I inositol polyphosphate 5-phosphatase 8-like(LOC107276788)	coding protein	psRNATarget
XM_015782967.1	ncRNA:24   GAUUAGA-UUGUACCAUAGUCUCGA   1   **|=*||-|=||||||||||||||| targets:968   ACAGACUCAGCAUGGUAUCAGAGCU   992 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group type I inositol polyphosphate 5-phosphatase 8-like (LOC107276788), transcript variant X2, mRNA	type I inositol polyphosphate 5-phosphatase 8-like(LOC107276788)	coding protein	psRNATarget
AK063017.1	ncRNA:24   GAUUAGAUUGUACCAUAGUCUCGA   1   |*||**|=|||||||||||||||* targets:34   CAAAAGUGACAUGGUAUCAGAGCA   57 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-110-A11, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).