| ncRNA ID | osa-miR5484 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr2:7796922-7797213 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - AACCGAGCGCGCUGUUGAUUA - 31 |
| Stem-loop(if miRNA) |
----------- -G --- C GGCUUGGAUGGGUCGCCUUCCUCCCUUGCUGCUCGGAUGAACCCUCGCCGCAUGCAUCGCGAUCUUGAUAUUCUUGGCAUGGAAUUAAUAGCGUCUCUUUUUUAUCCCCCUUACGG GGCGGCC GCUGCGGCG A GGC U ||||||| ||||||||| | ||| UUAGUUG GCGCGAGCC A CGU U CUCUAUUCUAA UC AAA - UGUAGCGUACGUAGGUGUCGUGUCGACUAGUCCGUUGGUUAGUUAGCUCUUUUGUUUUGUUCAUUUAACUCGCUCGUUCUUCUUGGUCUCUUAAGUCUCUUCGCGACCUCUAGUUC |
| Stem-loop sequence | GGCGGCCGGCUGCGGCGACGGCGGCUUGGAUGGGUCGCCUUCCUCCCUUGCUGCUCGGAUGAACCCUCGCCGCAUGCAUCGCGAUCUUGAUAUUCUUGGCAUGGAAUUAAUAGCGUCUCUUUUUUAUCCCCCUUACGGUUCUUGAUCUCCAGCGCUUCUCUGAAUUCUCUGGUUCUUCUUGCUCGCUCAAUUUACUUGUUUUGUUUUCUCGAUUGAUUGGUUGCCUGAUCAGCUGUGCUGUGGAUGCAUGCGAUGUUGCAAAACCGAGCGCGCUGUUGAUUAAUCUUAUCUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015775874.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group cation/calcium exchanger 1 (LOC4333615), mRNA | cation/calcium exchanger 1(LOC4333615) | coding protein | psRNATarget | |||||||||
| AK121052.1 |
|
2.0 | Oryza sativa Japonica Group cDNA clone:J023055H11, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| CT834036.1 |
|
2.0 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108K11, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |