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BaseInfo

ncRNA ID	ath-miRf10002-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - ACUCCUCUUCUUCUUGAUGUA - NA
Stem-loop(if miRNA)	UU  U        A  GG A     AAUCUAAAC       G  GC     ---     U AGAUUCUUACAUC  GA GAAGAGGA UG  A GCCGA         UGAAACA AG  GUCAC   CCAAU A |||||||||||||  || |||||||| ||  | |||||         ||||||| ||  |||||   ||||| U UUUAAGAAUGUAG  CU CUUCUCCU AC  U CGGCU         GCUUUGU UC  UAGUG   GGUUA C              UU  U        C  UU C     CUAUGUCUA       A  UA     AAU     A
Stem-loop sequence	AGAUUCUUACAUCUUGAUGAAGAGGAAUGGGAAGCCGAAAUCUAAACUGAAACAGAGGCGUCACCCAAUUAUCAAUUGGUAAGUGAUAUCUAUGUUUCGAUCUGUAUCUCGGCCUUUCACUCCUCUUCUUCUUGAUGUAAGAAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_102823.4	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=||*|||||||||||||||* targets:2011   UGCAACAAGAAGAAGAGGAGG   2031 Target Full Sequence	2.0	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT1G30860)	coding protein	psRNATarget
AK175862.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=||*|||||||||||||||* targets:1922   UGCAACAAGAAGAAGAGGAGG   1942 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-48-E09	NA	coding protein	psRNATarget
AK176110.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=||*|||||||||||||||* targets:1922   UGCAACAAGAAGAAGAGGAGG   1942 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-89-O09	NA	coding protein	psRNATarget
AK175826.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=||*|||||||||||||||* targets:1862   UGCAACAAGAAGAAGAGGAGG   1882 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-43-E14	NA	coding protein	psRNATarget
AK176133.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=||*|||||||||||||||* targets:1862   UGCAACAAGAAGAAGAGGAGG   1882 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-94-E18	NA	coding protein	psRNATarget
BT010579.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=||*|||||||||||||||* targets:1664   UGCAACAAGAAGAAGAGGAGG   1684 Target Full Sequence	2.0	Arabidopsis thaliana At1g30860 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001333587.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=*|||*|||||||||||||| targets:1635   UGAAUCCAGAAGAAGAGGAGU   1655 Target Full Sequence	2.0	Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA	Cysteine/Histidine-rich C1 domain family protein(AT1G53340)	coding protein	psRNATarget
NM_001333588.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=*|||*|||||||||||||| targets:1543   UGAAUCCAGAAGAAGAGGAGU   1563 Target Full Sequence	2.0	Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA	Cysteine/Histidine-rich C1 domain family protein(AT1G53340)	coding protein	psRNATarget
NM_104213.2	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=*|||*|||||||||||||| targets:1506   UGAAUCCAGAAGAAGAGGAGU   1526 Target Full Sequence	2.0	Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA	Cysteine/Histidine-rich C1 domain family protein(AT1G53340)	coding protein	psRNATarget
NM_127685.4	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   ||||*|||||=|||||||||| targets:536   UACAGCAAGAGGAAGAGGAGU   556 Target Full Sequence	2.5	Arabidopsis thaliana XAP5 family protein (XCT), mRNA	XAP5 family protein(XCT)	coding protein	psRNATarget
AY080816.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   ||||*|||||=|||||||||| targets:351   UACAGCAAGAGGAAGAGGAGU   371 Target Full Sequence	2.5	Arabidopsis thaliana At2g21150 mRNA sequence	NA	coding protein	psRNATarget
BT000912.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   ||||*|||||=|||||||||| targets:293   UACAGCAAGAGGAAGAGGAGU   313 Target Full Sequence	2.5	Arabidopsis thaliana clone C105227 putative XAP-5 protein (At2g21150) mRNA, complete cds	NA	coding protein	psRNATarget
BX822736.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=|||*||||||||||*|||| targets:1481   UGCAUGAAGAAGAAGAAGAGU   1501 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB60ZC06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX813666.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=|||*||||||||||*|||| targets:1470   UGCAUGAAGAAGAAGAAGAGU   1490 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB31ZB08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX816174.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=|||*||||||||||*|||| targets:1375   UGCAUGAAGAAGAAGAAGAGU   1395 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH32ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK227144.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=|||*||||||||||*|||| targets:1400   UGCAUGAAGAAGAAGAAGAGU   1420 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-83-M03	NA	coding protein	psRNATarget
BX819846.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=|||*||||||||||*|||| targets:1375   UGCAUGAAGAAGAAGAAGAGU   1395 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZE09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX827721.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |=|||*||||||||||*|||| targets:1357   UGCAUGAAGAAGAAGAAGAGU   1377 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH14ZD09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001332211.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   |*||||||||||*|||||||* targets:1234   UUCAUCAAGAAGCAGAGGAGG   1254 Target Full Sequence	2.5	Arabidopsis thaliana wall associated kinase-like 4 (WAKL4), mRNA	wall associated kinase-like 4(WAKL4)	coding protein	psRNATarget
NM_114690.3	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   *|||*==|||||||||||||| targets:2575   CACAGUGAGAAGAAGAGGAGU   2595 Target Full Sequence	3.0	Arabidopsis thaliana transmembrane protein mRNA	transmembrane protein(AT3G48200)	coding protein	psRNATarget
AY039930.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   *|||*==|||||||||||||| targets:2091   CACAGUGAGAAGAAGAGGAGU   2111 Target Full Sequence	3.0	Arabidopsis thaliana unknown protein (At3g48200) mRNA, complete cds	NA	coding protein	psRNATarget
AK226883.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   *|||*==|||||||||||||| targets:2057   CACAGUGAGAAGAAGAGGAGU   2077 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-09-K01	NA	coding protein	psRNATarget
BX822922.1	ncRNA:21   AUGUAGUUCUUCUUCUCCUCA   1   *|||*==|||||||||||||| targets:488   CACAGUGAGAAGAAGAGGAGU   508 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB73ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget