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BaseInfo

ncRNA ID osa-miR399g
Species Oryza sativa
Class miRNA
Genome position Chr2:7675284-7675402 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 89 - UGCCAAAGGAGAUUUGCCCAG - 109
Stem-loop(if miRNA) AU   C     A      CUA    A        --       -  UG  UA    UAU   U
  GUG AUUGC GGGCAA   CUCC UUGGCAGA  GGGAUGG AU  GA  UGGA   GGC G
  ||| ||||| ||||||   |||| ||||||||  ||||||| ||  ||  ||||   |||
  CAC UAGCG CCCGUU   GAGG AACCGUCU  CCCUACC UA  UU  ACCU   UCG A
CU   U     A      -UA    A        AU       C  GU  --    ---   U
Stem-loop sequence AUGUGCAUUGCAGGGCAACUACUCCAUUGGCAGAGGGAUGGAUUGGAUAUGGAUAUGGCUGAUGCUUCCAUUUGAUCCCAUCCCUAUCUGCCAAAGGAGAUUUGCCCAGCGAUUCACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK241747.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||||||||||||||||||
targets:796   CUGGGCAAAUCUCCUUUGGCA   816

0.0 Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence NA coding protein psRNATarget
AK241747.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =||||||||||||||||||||
targets:925   UUGGGCAAAUCUCCUUUGGCA   945

0.0 Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence NA coding protein psRNATarget
AK241747.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |*|||||||||||||||||||
targets:880   CCGGGCAAAUCUCCUUUGGCA   900

0.0 Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence NA coding protein psRNATarget
AK241747.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:842   UCGGGCAAAUCUCCUUUGGCA   862

0.0 Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence NA coding protein psRNATarget
AK241747.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:713   UAGGGCAAAUCUCCUUUGGCA   733

0.0 Oryza sativa Japonica Group cDNA, clone: J065202E18, full insert sequence NA coding protein psRNATarget
XM_015784159.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |||||||||||||||||||||
targets:903   CUGGGCAAAUCUCCUUUGGCA   923

0.0 PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC4339579) coding protein psRNATarget
XM_015784159.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =||||||||||||||||||||
targets:1032   UUGGGCAAAUCUCCUUUGGCA   1052

0.0 PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC4339579) coding protein psRNATarget
XM_015784159.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |*|||||||||||||||||||
targets:987   CCGGGCAAAUCUCCUUUGGCA   1007

0.0 PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC4339579) coding protein psRNATarget
XM_015784159.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:949   UCGGGCAAAUCUCCUUUGGCA   969

0.0 PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC4339579) coding protein psRNATarget
XM_015784159.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:820   UAGGGCAAAUCUCCUUUGGCA   840

0.0 PREDICTED: Oryza sativa Japonica Group probable ubiquitin-conjugating enzyme E2 24 (LOC4339579), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC4339579) coding protein psRNATarget
AK108715.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |*||||||||=||||||||||
targets:1104   CGGGGCAAAUUUCCUUUGGCA   1124

1.5 Oryza sativa Japonica Group cDNA clone:002-150-B07, full insert sequence NA coding protein psRNATarget
XM_015782183.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |*||||||||=||||||||||
targets:1148   CGGGGCAAAUUUCCUUUGGCA   1168

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339406 (LOC4339406), transcript variant X2, mRNA uncharacterized LOC4339406(LOC4339406) coding protein psRNATarget
XM_015782182.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  |*||||||||=||||||||||
targets:1169   CGGGGCAAAUUUCCUUUGGCA   1189

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339406 (LOC4339406), transcript variant X1, mRNA uncharacterized LOC4339406(LOC4339406) coding protein psRNATarget
JQ845900.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  ||*||*|=|||||||||||||
targets:1180   CUUGGAAGAUCUCCUUUGGCA   1200

3.0 Oryza sativa Japonica Group bacterial blight disease resistance related protein mRNA, complete cds NA coding protein psRNATarget
AK067015.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  ||*||*|=|||||||||||||
targets:1681   CUUGGAAGAUCUCCUUUGGCA   1701

3.0 Oryza sativa Japonica Group cDNA clone:J013091I15, full insert sequence NA coding protein psRNATarget
AK120289.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  ||*||*|=|||||||||||||
targets:1678   CUUGGAAGAUCUCCUUUGGCA   1698

3.0 Oryza sativa Japonica Group cDNA clone:J013050D17, full insert sequence NA coding protein psRNATarget
XM_015760140.1
ncRNA:21   GACCCGUUUAGAGGAAACCGU   1
  =|***||||||||||||||||
targets:2094   UUCUCCAAAUCUCCUUUGGCA   2114

3.0 PREDICTED: Oryza sativa Japonica Group histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like (LOC107277010), mRNA histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like(LOC107277010) coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
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