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BaseInfo

ncRNA ID	osa-miR5340
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:5683378-5683465 [-]
Reference genome	MSU7
Source	miRBase
Length	23
Mature sequence(if miRNA)	11 - UGAUGACGUGGAUGAAUUUCAAA - 33
Stem-loop(if miRNA)	G        A  C   A          UA      UG      U  AAAAUGAA GU UGA GAUUUAUUCA  UCAUCA  AGUAAA U  |||||||| || ||| ||||||||||  ||||||  ||||||  UUUUAUUU CA ACU UUAAGUAGGU  AGUAGU  UCAUUU A -        G  A   -          GC      GU      U
Stem-loop sequence	GAAAAUGAAAGUCUGAAGAUUUAUUCAUAUCAUCAUGAGUAAAUUAUUUUACUUGUGAUGACGUGGAUGAAUUUCAAACGUUUAUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288313.1	ncRNA:23   AAACUUUAAGUAGGUGCAGUAGU   1   ||*||=||||||||||||||||| targets:3566   UUCGAGAUUCAUCCACGUCAUCA   3588 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
XM_015771677.1	ncRNA:23   AAACUUUAAGUAGGUGCAGUAGU   1   **|||=||||||||||||||||= targets:1566   GCUGAGAUUCAUCCACGUCAUCG   1588 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein disulfide isomerase-like 5-3 (LOC4329624), mRNA	protein disulfide isomerase-like 5-3(LOC4329624)	coding protein	psRNATarget
XM_015789578.1	ncRNA:23   AAACUUUAAGUAGGUGCAGUAGU   1   |**||=||||=|||||||||||| targets:1813   UCCGAGAUUCGUCCACGUCAUCA   1835 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein SRC2 (LOC9270916), mRNA	protein SRC2(LOC9270916)	coding protein	psRNATarget
LQ236432.1	ncRNA:23   AAACUUUAAGUAGGUGCAGUAGU   1   |**||=|||||||*||||||||| targets:11   UCGGAGAUUCAUCAACGUCAUCA   33 Target Full Sequence	2.5	Sequence 2427 from Patent EP2985353	NA	coding protein	psRNATarget
JB164763.1	ncRNA:23   AAACUUUAAGUAGGUGCAGUAGU   1   |**||=|||||||*||||||||| targets:11   UCGGAGAUUCAUCAACGUCAUCA   33 Target Full Sequence	2.5	Sequence 2427 from Patent EP2559767	NA	coding protein	psRNATarget
HI404302.1	ncRNA:23   AAACUUUAAGUAGGUGCAGUAGU   1   |**||=|||||||*||||||||| targets:11   UCGGAGAUUCAUCAACGUCAUCA   33 Target Full Sequence	2.5	Sequence 2427 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015780627.1	ncRNA:23   AAACUUUAAGUAGGUGCAGUAGU   1   *|*||||*|=||||||||||||* targets:46   AUCGAAACUUAUCCACGUCAUCC   68 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group atherin (LOC4335067), transcript variant X12, mRNA	atherin(LOC4335067)	coding protein	psRNATarget

Reference

1	PMID:21791435 "Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)"; Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q; J Exp Bot. 62:4943-4954(2011).