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BaseInfo

ncRNA ID osa-miR167e-3p
Species Oryza sativa
Class miRNA
Genome position Chr2:3742241-3742513 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 9 - AGAUCAUGUUGCAGCUUCACU - 29
Stem-loop(if miRNA) U        A         C             -  UCAGGCAUGAGCCAAAUCUAUCCAUGGUGUUGGUGGUACUGAAAUUACCGCGUUUUCGAGGUUUUUCGUCGUGUCAACUUGCGAAGGGAAUUACGGGUUC
 GUGAGAGA UGAAGCUGC AGCAUGAUCUGGU UG                                                                                                    U
 |||||||| ||||||||| ||||||||||||| ||                                                                                                    U
 CACUCUCU ACUUCGACG UUGUACUAGACUA CU                                                                                                    G
C        C         -             C  CGGUUUAAGGUUAGUGAGGGUGGAGAAUGACUUUGAGUGUUCUUGUUAGUAUUAAGAUGGAGAUGAUUGGUUCGGGUGUGGAGGAUAGUGGUUACGAGUA
Stem-loop sequence UGUGAGAGAAUGAAGCUGCCAGCAUGAUCUGGUUGUCAGGCAUGAGCCAAAUCUAUCCAUGGUGUUGGUGGUACUGAAAUUACCGCGUUUUCGAGGUUUUUCGUCGUGUCAACUUGCGAAGGGAAUUACGGGUUCUUGAUGAGCAUUGGUGAUAGGAGGUGUGGGCUUGGUUAGUAGAGGUAGAAUUAUGAUUGUUCUUGUGAGUUUCAGUAAGAGGUGGGAGUGAUUGGAAUUUGGCUCCAUCAGAUCAUGUUGCAGCUUCACUCUCUCACC

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).