ncRNA ID | osa-miR167e-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:3742241-3742513 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 243 - UGAAGCUGCCAGCAUGAUCUG - 263 |
Stem-loop(if miRNA) |
U        A         C             -  UCAGGCAUGAGCCAAAUCUAUCCAUGGUGUUGGUGGUACUGAAAUUACCGCGUUUUCGAGGUUUUUCGUCGUGUCAACUUGCGAAGGGAAUUACGGGUUC  GUGAGAGA UGAAGCUGC AGCAUGAUCUGGU UG                                                                                                    U  |||||||| ||||||||| ||||||||||||| ||                                                                                                    U  CACUCUCU ACUUCGACG UUGUACUAGACUA CU                                                                                                    G C        C         -             C  CGGUUUAAGGUUAGUGAGGGUGGAGAAUGACUUUGAGUGUUCUUGUUAGUAUUAAGAUGGAGAUGAUUGGUUCGGGUGUGGAGGAUAGUGGUUACGAGUA |
Stem-loop sequence | UGUGAGAGAAUGAAGCUGCCAGCAUGAUCUGGUUGUCAGGCAUGAGCCAAAUCUAUCCAUGGUGUUGGUGGUACUGAAAUUACCGCGUUUUCGAGGUUUUUCGUCGUGUCAACUUGCGAAGGGAAUUACGGGUUCUUGAUGAGCAUUGGUGAUAGGAGGUGUGGGCUUGGUUAGUAGAGGUAGAAUUAUGAUUGUUCUUGUGAGUUUCAGUAAGAGGUGGGAGUGAUUGGAAUUUGGCUCCAUCAGAUCAUGUUGCAGCUUCACUCUCUCACC |
1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |