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BaseInfo

ncRNA ID	ath-miRf10001-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CCCAGAAAAUCUCAAAGCCC - NA
Stem-loop(if miRNA)	A       C     -     CAAAUCUGUUAAAGGUUGCCGACC GAUUUGGGGCUUUGAGA UUUCUGG CCAUC CAACC                        A ||||||||||||||||| ||||||| ||||| |||||                        C CUAAACCCCGAAACUCU AAAGACC GGUAG GGUGU                        A                  A       C     C     GAAAGAGACCGGUUAUAACUUUCC
Stem-loop sequence	GAUUUGGGGCUUUGAGAAUUUCUGGCCCAUCCAACCCAAAUCUGUUAAAGGUUGCCGACCACACCUUUCAAUAUUGGCCAGAGAAAGUGUGGCGAUGGCCCAGAAAAUCUCAAAGCCCCAAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY140100.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   |||=||*||||||||||||| targets:250   GGGUUUCGAGAUUUUCUGGG   269 Target Full Sequence	2.0	Arabidopsis thaliana unknown protein (At2g28320) mRNA, complete cds	NA	coding protein	psRNATarget
BX820626.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   |||=||*||||||||||||| targets:241   GGGUUUCGAGAUUUUCUGGG   260 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH53ZH09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK226536.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   |||=||*||||||||||||| targets:265   GGGUUUCGAGAUUUUCUGGG   284 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-08-O13	NA	coding protein	psRNATarget
NM_128391.3	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   |||=||*||||||||||||| targets:375   GGGUUUCGAGAUUUUCUGGG   394 Target Full Sequence	2.0	Arabidopsis thaliana Pleckstrin homology (PH) and lipid-binding START domains-containing protein mRNA	Pleckstrin homology (PH) and lipid-binding START domains-containing protein(AT2G28320)	coding protein	psRNATarget
BT029754.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *||||||||||*|||||||* targets:129   AGGCUUUGAGAAUUUCUGGA   148 Target Full Sequence	2.5	Arabidopsis thaliana At1g51310 mRNA, complete cds	NA	coding protein	psRNATarget
BX814833.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *||||||||||||*|||||* targets:416   UGGCUUUGAGAUUCUCUGGU   435 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS10ZB04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK221584.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *||||||||||*|||||||* targets:426   AGGCUUUGAGAAUUUCUGGA   445 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-84-D13	NA	coding protein	psRNATarget
NM_104009.3	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *||||||||||*|||||||* targets:430   AGGCUUUGAGAAUUUCUGGA   449 Target Full Sequence	2.5	Arabidopsis thaliana tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase mRNA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase(AT1G51310)	coding protein	psRNATarget
NM_100940.7	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *|||*||||||||*|||||| targets:1034   CGGCAUUGAGAUUCUCUGGG   1053 Target Full Sequence	2.5	Arabidopsis thaliana Pectin lyase-like superfamily protein mRNA	Pectin lyase-like superfamily protein(AT1G10640)	coding protein	psRNATarget
BX824118.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   |||=**|||||||||||||| targets:342   GGGUGGUGAGAUUUUCUGGG   361 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH23ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX814013.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *|*=|||||||||||||||* targets:1128   AGUUUUUGAGAUUUUCUGGA   1147 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZC01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001036034.2	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *|*=|||||||||||||||* targets:1179   AGUUUUUGAGAUUUUCUGGA   1198 Target Full Sequence	3.0	Arabidopsis thaliana O-acetyltransferase family protein (RWA4), mRNA	O-acetyltransferase family protein(RWA4)	coding protein	psRNATarget
NM_102729.3	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *|*=|||||||||||||||* targets:1128   AGUUUUUGAGAUUUUCUGGA   1147 Target Full Sequence	3.0	Arabidopsis thaliana O-acetyltransferase family protein (RWA4), mRNA	O-acetyltransferase family protein(RWA4)	coding protein	psRNATarget
NM_001332877.1	ncRNA:20   CCCGAAACUCUAAAAGACCC   1   *|*=|||||||||||||||* targets:1436   AGUUUUUGAGAUUUUCUGGA   1455 Target Full Sequence	3.0	Arabidopsis thaliana O-acetyltransferase family protein (RWA4), mRNA	O-acetyltransferase family protein(RWA4)	coding protein	psRNATarget