Search result

BaseInfo

ncRNA ID	osa-miR397b
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:3280781-3280898 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	88 - UUAUUGAGUGCAGCGUUGAUG - 108
Stem-loop(if miRNA)	G      AUU    A      C    A       GCC    -----G  UAAAUUAAU AG GAAGGC   AUUG GUGCAG GUUG UGAACCU   GGCC      GC         U || ||||||   |||| |||||| |||| |||||||   ||||      ||         A UC UUUCCG   UAAC CACGUC CGAC ACUUGGA   UCGG      UC         G   G      CAC    C      A    C       AAC    UCAAAG  UGAAAGAAC
Stem-loop sequence	AGGGAAGGCAUUAUUGAGUGCAGCGUUGAUGAACCUGCCGGCCGGCUAAAUUAAUUAGCAAGAAAGUCUGAAACUGGCUCAAAGGUUCACCAGCACUGCACCCAAUCACGCCUUUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015769221.1	ncRNA:21   GUAGUUGCGACGUGAGUUAUU   1   ||||||||||||||||||||| targets:1489   CAUCAACGCUGCACUCAAUAA   1509 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9267626 (LOC9267626), mRNA	uncharacterized LOC9267626(LOC9267626)	coding protein	psRNATarget
BT131168.1	ncRNA:21   GUAGUUGCGACGUGAGUUAUU   1   |*||||*|||||||||||*|| targets:381   CUUCAAGGCUGCACUCAAAAA   401 Target Full Sequence	2.5	Oryza sativa clone RRlibC00166 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).