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BaseInfo

ncRNA ID osa-miR812b
Species Oryza sativa
Class miRNA
Genome position Chr2:1936324-1936493 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 9 - GACGGACGGUUAAACGUUGGAC - 30
Stem-loop(if miRNA)     C   A    -                               --    AAA    ------- AAAAAAUAGUCACGCAUAAAGUA
GUAU CGU UCUA CGUUUGACCGUUCGUCUUAUUUGAAAAUUUU  AUGA   GAUU       A                       A
|||| ||| |||| |||||||||||||||||||||||||||||||  ||||   ||||       |                       U
CAUA GCA AGGU GCAAAUUGGCAGGCAGAAUAAACUUUUAAAA  UACU   UCAU       A                       A
    A   C    U                               AU    -AA    AAAAAUA CAAUAAUCUACUAUUUUGUACUU
Stem-loop sequence GUAUCCGUAUCUACGUUUGACCGUUCGUCUUAUUUGAAAAUUUUAUGAAAAGAUUAAAAAAAUAGUCACGCAUAAAGUAAUAUUCAUGUUUUAUCAUCUAAUAACAAUAAAAAUACUAAUCAUUAAAAAUUUUCAAAUAAGACGGACGGUUAAACGUUGGACACGAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT832631.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||||||||||=||||||||||
targets:345   GUCCAACGUUUGACCGUCCGUC   366

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence NA coding protein psRNATarget
CT832630.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||||||||||=||||||||||
targets:345   GUCCAACGUUUGACCGUCCGUC   366

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence NA coding protein psRNATarget
XM_015776704.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||=|||||||=||||||||||
targets:1603   GUCUAACGUUUGACCGUCCGUC   1624

2.5 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015776705.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||=|||||||=||||||||||
targets:1597   GUCUAACGUUUGACCGUCCGUC   1618

2.5 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015776706.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||=|||||||=||||||||||
targets:1591   GUCUAACGUUUGACCGUCCGUC   1612

2.5 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
CT828091.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||=|||||||=||||||||||
targets:1576   GUCUAACGUUUGACCGUCCGUC   1597

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence NA coding protein psRNATarget
AK242028.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||=|||||||=||||||||||
targets:1480   GUCUAACGUUUGACCGUCCGUC   1501

2.5 Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence NA coding protein psRNATarget
LQ236018.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  ||==|||||||=||||||||||
targets:18   GUUUAACGUUUGACCGUCCGUC   39

2.5 Sequence 2013 from Patent EP2985353 NA coding protein psRNATarget
JB164349.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  ||==|||||||=||||||||||
targets:18   GUUUAACGUUUGACCGUCCGUC   39

2.5 Sequence 2013 from Patent EP2559767 NA coding protein psRNATarget
HI403888.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  ||==|||||||=||||||||||
targets:18   GUUUAACGUUUGACCGUCCGUC   39

2.5 Sequence 2013 from Patent EP2074227 NA coding protein psRNATarget
XM_015770137.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--|||||||||=||||||||||
targets:3145   GUGCCCAACGUUUGACCGUCCGUC   3168

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC9268112), mRNA probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC9268112) coding protein psRNATarget
AK108063.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--|||||||||=||||||||||
targets:1350   GUGCCCAACGUUUGACCGUCCGUC   1373

1.5 Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence NA coding protein psRNATarget
AK070409.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||||||*||||||=|||||||
targets:1730   GUCCAACAUUUAACUGUCCGUC   1751

2.5 Oryza sativa Japonica Group cDNA clone:J023054N07, full insert sequence NA coding protein psRNATarget
AK106724.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||||||*|||=||||||||||
targets:672   GUCCAACAUUUGACCGUCCGUC   693

2.5 Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence NA coding protein psRNATarget
CT827991.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |||||||*|||=||||||||||
targets:659   GUCCAACAUUUGACCGUCCGUC   680

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence NA coding protein psRNATarget
AK064236.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  ||*||||||||=||||||||||
targets:1511   GUGCAACGUUUGACCGUCCGUC   1532

1.5 Oryza sativa Japonica Group cDNA clone:002-104-H12, full insert sequence NA coding protein psRNATarget
AK289036.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  |*|||||||||=||||||||||
targets:980   GCCCAACGUUUGACCGUCCGUC   1001

1.5 Oryza sativa Japonica Group cDNA, clone: J090091J22, full insert sequence NA coding protein psRNATarget
XM_015788892.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--||||=||||=||||||||||
targets:3715   GUACCCAAUGUUUGACCGUCCGUC   3738

2.5 PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4340067), mRNA LRR receptor-like serine/threonine-protein kinase FLS2(LOC4340067) coding protein psRNATarget
AK287701.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--||||=||||=||||||||||
targets:3586   GUACCCAAUGUUUGACCGUCCGUC   3609

2.5 Oryza sativa Japonica Group cDNA, clone: J065130L06, full insert sequence NA coding protein psRNATarget
AK066541.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--=||||||||=||||||||||
targets:2913   GUGCUCAACGUUUGACCGUCCGUC   2936

1.5 Oryza sativa Japonica Group cDNA clone:J013070E20, full insert sequence NA coding protein psRNATarget
XM_015775992.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--=||||||||=||||||||||
targets:2916   GUGCUCAACGUUUGACCGUCCGUC   2939

1.5 PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X1, mRNA CBL-interacting protein kinase 10(LOC4332786) coding protein psRNATarget
XM_015775993.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--=||||||||=||||||||||
targets:1962   GUGCUCAACGUUUGACCGUCCGUC   1985

1.5 PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X2, mRNA CBL-interacting protein kinase 10(LOC4332786) coding protein psRNATarget
CT828824.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--=||||||||=||||||||||
targets:1082   GUGCUCAACGUUUGACCGUCCGUC   1105

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D05, full insert sequence NA coding protein psRNATarget
AK100367.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--||||=||||*||||||||||
targets:976   GUGCCCAAUGUUUUACCGUCCGUC   999

2.5 Oryza sativa Japonica Group cDNA clone:J023083P20, full insert sequence NA coding protein psRNATarget
XM_015757480.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--||||=||||*||||||||||
targets:1026   GUGCCCAAUGUUUUACCGUCCGUC   1049

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348155 (LOC4348155), mRNA uncharacterized LOC4348155(LOC4348155) coding protein psRNATarget
AK071213.1
ncRNA:22   CA--GGUUGCAAAUUGGCAGGCAG   1
  ||--||||=||||*||||||||||
targets:976   GUGCCCAAUGUUUUACCGUCCGUC   999

2.5 Oryza sativa Japonica Group cDNA clone:J023087E24, full insert sequence NA coding protein psRNATarget
XM_015762747.1
ncRNA:22   CAGGUUGCAAAUUGGCAGGCAG   1
  ||=||||*|||||||*||||||
targets:1744   GUUCAACAUUUAACCAUCCGUC   1765

2.5 PREDICTED: Oryza sativa Japonica Group probable glycerol-3-phosphate acyltransferase 3 (LOC4352530), mRNA probable glycerol-3-phosphate acyltransferase 3(LOC4352530) coding protein psRNATarget

Reference

1 PMID:16959252
"Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development";
Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH;
FEBS Lett. 580:5111-5116(2006).
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