| ncRNA ID | osa-miR415 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr12:26270477-26270620 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 104 - AACAGAACAGAAGCAGAGCAG - 124 |
| Stem-loop(if miRNA) |
AGAGA ACAGAGCAGAAACAGAACAGAAGCAGAGCAGCUGUGUAUACACAACACUGCAACUAUCCCUA GUUUU U ||||| CUUCG C --GAA AAAACGAAACGAACAUGUCUGUCGGUUCCUCUCGAGUCGACCAAAGACGAAACAGGGAGUCA |
| Stem-loop sequence | AGAGAGUUUUACAGAGCAGAAACAGAACAGAAGCAGAGCAGCUGUGUAUACACAACACUGCAACUAUCCCUAUCACUGAGGGACAAAGCAGAAACCAGCUGAGCUCUCCUUGGCUGUCUGUACAAGCAAAGCAAAAGCUUCAAG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015763221.1 |
|
0.0 | PREDICTED: Oryza sativa Japonica Group 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic (LOC9270250), mRNA | 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic(LOC9270250) | coding protein | psRNATarget | |||||||||
| AK107649.1 |
|
0.0 | Oryza sativa Japonica Group cDNA clone:002-131-F10, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015778953.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF038 (LOC4336587), mRNA | ethylene-responsive transcription factor ERF038(LOC4336587) | coding protein | psRNATarget | |||||||||
| AK108473.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"; Wang XJ, Reyes JL, Chua NH, Gaasterland T; Genome Biol. 5:R65(2004). |
| 2 | PMID:16669754
"MicroRNAS and their regulatory roles in plants"; Jones-Rhoades MW, Bartel DP, Bartel B; Annu Rev Plant Biol. 57:19-53(2006). |