| ncRNA ID | osa-miR7693-3p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr12:25875099-25875419 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 100 - GACGUCCAUCGAUGAAGAGCGA - 121 |
| Stem-loop(if miRNA) |
G C C G A A C C UG - AGAA GGCGAUGAGGAAUCUU UGGAAGGUGUGGUGCCACUCCGGCAGU GCAGCCUCCUCAACAUGGGAAUG CG CAGUUGGGUUGAGGAGGCU GAGGUUU CGCUCUUCAUCGAUGG UGUCUGUCCU CCUCCUCGGCCCUCGCUGCCG AUGA C |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||| |||| A CCGCUACUCCUUAGAA ACCUUCCACGCCACGGUGAGGCCGUCA CGUCGGAGGAGUUGUACCCUUAC GC GUUAACUCAACUCCUCCGA CUCCAAA GCGAGAAGUAGCUACC GCAGGCAGGA GGAGGAGCCGGGAGCGGCGGC UAUU A - A C A C C A U GU C GAAG |
| Stem-loop sequence | GGGCGAUGAGGAAUCUUCUGGAAGGUGUGGUGCCACUCCGGCAGUCGCAGCCUCCUCAACAUGGGAAUGGCGACAGUUGGGUUGAGGAGGCUAGAGGUUUCCGCUCUUCAUCGAUGGCUGUCUGUCCUUGCCUCCUCGGCCCUCGCUGCCGAUGAAGAACAAGAAGUUAUCCGGCGGCGAGGGCCGAGGAGGUGAGGACGGACGUCCAUCGAUGAAGAGCGAAAACCUCCAGCCUCCUCAACUCAAUUGCCGACAUUCCCAUGUUGAGGAGGCUGCCACUGCCGGAGUGGCACCGCACCUUCCAAAAGAUUCCUCAUCGCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK119703.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-157-D11, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015786035.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341056 (LOC4341056), transcript variant X2, mRNA | uncharacterized LOC4341056(LOC4341056) | coding protein | psRNATarget |
| 1 | PMID:23627500
"Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance"; Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B; New Phytol. 199:212-227(2013). |