ncRNA ID | osa-miR7693-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:25875099-25875419 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 202 - GUUUCCGCUCUUCAUCGAUGGCUG - 225 |
Stem-loop(if miRNA) |
G                C                           C                       G  A                   A       C                C          UG                     -    AGAA  GGCGAUGAGGAAUCUU UGGAAGGUGUGGUGCCACUCCGGCAGU GCAGCCUCCUCAACAUGGGAAUG CG CAGUUGGGUUGAGGAGGCU GAGGUUU CGCUCUUCAUCGAUGG UGUCUGUCCU  CCUCCUCGGCCCUCGCUGCCG AUGA    C  |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||    A  CCGCUACUCCUUAGAA ACCUUCCACGCCACGGUGAGGCCGUCA CGUCGGAGGAGUUGUACCCUUAC GC GUUAACUCAACUCCUCCGA CUCCAAA GCGAGAAGUAGCUACC GCAGGCAGGA  GGAGGAGCCGGGAGCGGCGGC UAUU    A -                A                           C                       A  C                   C       A                U          GU                     C    GAAG |
Stem-loop sequence | GGGCGAUGAGGAAUCUUCUGGAAGGUGUGGUGCCACUCCGGCAGUCGCAGCCUCCUCAACAUGGGAAUGGCGACAGUUGGGUUGAGGAGGCUAGAGGUUUCCGCUCUUCAUCGAUGGCUGUCUGUCCUUGCCUCCUCGGCCCUCGCUGCCGAUGAAGAACAAGAAGUUAUCCGGCGGCGAGGGCCGAGGAGGUGAGGACGGACGUCCAUCGAUGAAGAGCGAAAACCUCCAGCCUCCUCAACUCAAUUGCCGACAUUCCCAUGUUGAGGAGGCUGCCACUGCCGGAGUGGCACCGCACCUUCCAAAAGAUUCCUCAUCGCC |
1 | PMID:23627500
"Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance"; Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B; New Phytol. 199:212-227(2013). |