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BaseInfo

ncRNA ID osa-miR7693-5p
Species Oryza sativa
Class miRNA
Genome position Chr12:25875099-25875419 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 202 - GUUUCCGCUCUUCAUCGAUGGCUG - 225
Stem-loop(if miRNA) G                C                           C                       G  A                   A       C                C          UG                     -    AGAA
 GGCGAUGAGGAAUCUU UGGAAGGUGUGGUGCCACUCCGGCAGU GCAGCCUCCUCAACAUGGGAAUG CG CAGUUGGGUUGAGGAGGCU GAGGUUU CGCUCUUCAUCGAUGG UGUCUGUCCU  CCUCCUCGGCCCUCGCUGCCG AUGA    C
 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||    A
 CCGCUACUCCUUAGAA ACCUUCCACGCCACGGUGAGGCCGUCA CGUCGGAGGAGUUGUACCCUUAC GC GUUAACUCAACUCCUCCGA CUCCAAA GCGAGAAGUAGCUACC GCAGGCAGGA  GGAGGAGCCGGGAGCGGCGGC UAUU    A
-                A                           C                       A  C                   C       A                U          GU                     C    GAAG
Stem-loop sequence GGGCGAUGAGGAAUCUUCUGGAAGGUGUGGUGCCACUCCGGCAGUCGCAGCCUCCUCAACAUGGGAAUGGCGACAGUUGGGUUGAGGAGGCUAGAGGUUUCCGCUCUUCAUCGAUGGCUGUCUGUCCUUGCCUCCUCGGCCCUCGCUGCCGAUGAAGAACAAGAAGUUAUCCGGCGGCGAGGGCCGAGGAGGUGAGGACGGACGUCCAUCGAUGAAGAGCGAAAACCUCCAGCCUCCUCAACUCAAUUGCCGACAUUCCCAUGUUGAGGAGGCUGCCACUGCCGGAGUGGCACCGCACCUUCCAAAAGAUUCCUCAUCGCC

Reference

1 PMID:23627500
"Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance";
Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B;
New Phytol. 199:212-227(2013).