Search result

BaseInfo

ncRNA ID	osa-miR2864.2
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:25664721-25664821 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	60 - UUGUUUUGCAUUGUAUAGGUA - 80
Stem-loop(if miRNA)	UCUAUUCAG      C  C                 U     UAGCAAUA      UC          CUUUUG UG CCUUGUUUUGCAUUGUA AGGUA        UGCCAU  U          |||||| || ||||||||||||||||| |||||        ||||||          GAGAAC AC GGAACAAAACGUGACAU UCCAU        ACGGUG  G ---------      A  A                 C     --------      AU
Stem-loop sequence	UCUAUUCAGCUUUUGCUGCCCUUGUUUUGCAUUGUAUAGGUAUAGCAAUAUGCCAUUCUGUAGUGGCAUACCUCUACAGUGCAAAACAAGGACAACAAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK073576.1	ncRNA:21   AUGGAUAUGUUAC-GUUUUGUU   1   |||||||||||||-|||||||| targets:887   UACCUAUACAAUGACAAAACAA   908 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033046M12, full insert sequence	NA	coding protein	psRNATarget
XM_015767149.1	ncRNA:21   AUGGAUAUGUUAC-GUUUUGUU   1   |||||||||||||-|||||||| targets:880   UACCUAUACAAUGACAAAACAA   901 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4328946), transcript variant X1, mRNA	disease resistance protein RGA2(LOC4328946)	coding protein	psRNATarget
XM_015767150.1	ncRNA:21   AUGGAUAUGUUAC-GUUUUGUU   1   |||||||||||||-|||||||| targets:880   UACCUAUACAAUGACAAAACAA   901 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4328946), transcript variant X2, mRNA	disease resistance protein RGA2(LOC4328946)	coding protein	psRNATarget
HI404496.1	ncRNA:21   AUGGAUAUGUUACGUUUUGUU   1   |||||*||||=|||||||||| targets:69   UACCUCUACAGUGCAAAACAA   89 Target Full Sequence	2.5	Sequence 2621 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236626.1	ncRNA:21   AUGGAUAUGUUACGUUUUGUU   1   |||||*||||=|||||||||| targets:69   UACCUCUACAGUGCAAAACAA   89 Target Full Sequence	2.5	Sequence 2621 from Patent EP2985353	NA	coding protein	psRNATarget
JB164957.1	ncRNA:21   AUGGAUAUGUUACGUUUUGUU   1   |||||*||||=|||||||||| targets:69   UACCUCUACAGUGCAAAACAA   89 Target Full Sequence	2.5	Sequence 2621 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015764525.1	ncRNA:21   AUGGAUAUGUUACGUUUUGUU   1   |||||*||||=|||||||||| targets:1371   UACCUCUACAGUGCAAAACAA   1391 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272154 (LOC9272154), transcript variant X1, mRNA	uncharacterized LOC9272154(LOC9272154)	coding protein	psRNATarget
XM_015764529.1	ncRNA:21   AUGGAUAUGUUACGUUUUGUU   1   |||||*||||=|||||||||| targets:1399   UACCUCUACAGUGCAAAACAA   1419 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272154 (LOC9272154), transcript variant X6, mRNA	uncharacterized LOC9272154(LOC9272154)	coding protein	psRNATarget
XM_015764527.1	ncRNA:21   AUGGAUAUGUUACGUUUUGUU   1   |||||*||||=|||||||||| targets:1413   UACCUCUACAGUGCAAAACAA   1433 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272154 (LOC9272154), transcript variant X3, mRNA	uncharacterized LOC9272154(LOC9272154)	coding protein	psRNATarget

Reference

1	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).